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Commit 8bdde6f0 authored by BIOPZ-Gypas Foivos's avatar BIOPZ-Gypas Foivos
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Fix typo

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1 merge request!101Feature/samtools sort after STAR
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...@@ -707,7 +707,7 @@ rule sort_genomic_alignment_samtools: ...@@ -707,7 +707,7 @@ rule sort_genomic_alignment_samtools:
shell: shell:
"(samtools sort \ "(samtools sort \
-o {output.bam} \ -o {output.bam} \
-T {params.prefix_temp_dir} \ -T {output.prefix_temp_dir} \
-@ {threads} \ -@ {threads} \
{params.additional_params} \ {params.additional_params} \
{input.bam}) \ {input.bam}) \
......
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