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Commit 8c9ef971 authored by Dominik Burri's avatar Dominik Burri
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change alfa_index log file

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1 merge request!39Alfa qc
......@@ -180,7 +180,7 @@ rule generate_alfa_index:
singularity:
"docker://zavolab/alfa:1.1.1"
log:
"logs/generate_alfa_index_{organism}_{index_size}.log"
os.path.join(config["local_log"], "{organism}_{index_size}_generate_alfa_index.log")
shell:
"alfa -a {input.gtf} \
-g {params.genome_index} \
......
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