Merge remote-tracking branch 'origin/master' into alfa_qc

.gitignore

.gitlab-ci.yml

README.md

images/workflow_dag.svg

runs/PUT_YOUR_WORKFLOW_RUN_CONFIGS_HERE

scripts/input_dict_caption.tsv

scripts/input_dict_field_key.tsv

scripts/labkey_api.md

scripts/labkey_api.py

scripts/labkey_to_snakemake.py

scripts/requirements.txt

snakemake/Snakefile

snakemake/create_snakemake_flowchart.sh

snakemake/paired_end.snakefile.smk

snakemake/preprocessing.snakefile

snakemake/run_snakefile.sh

snakemake/run_test.sh

snakemake/single_end.snakefile.smk

tests/RNA_Seq_data_template_test.tsv

tests/input_files/GSM1502498_1.fastq.gz