Use biocontainers images for star, gffread, salmon, kallisto, cutadapt,...
Use biocontainers images for star, gffread, salmon, kallisto, cutadapt, samtools, fastqc, alfa, bedtools, bedgraphtobigwig. Change container from bash to ubuntu. Fixes #149
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- Snakefile 16 additions, 16 deletionsSnakefile
- tests/test_integration_workflow/expected_output.md5 30 additions, 30 deletionstests/test_integration_workflow/expected_output.md5
- tests/test_integration_workflow_multiple_lanes/expected_output.md5 30 additions, 30 deletions...t_integration_workflow_multiple_lanes/expected_output.md5
- workflow/rules/paired_end.snakefile.smk 5 additions, 5 deletionsworkflow/rules/paired_end.snakefile.smk
- workflow/rules/single_end.snakefile.smk 6 additions, 6 deletionsworkflow/rules/single_end.snakefile.smk
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