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Commit dcbb51e6 authored by Dominik Burri's avatar Dominik Burri
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included ALFA results for Unique reads. Fixes #93

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1 merge request!52ALFA extensions
Pipeline #10497 passed
Stage: test
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+ 26
− 12
View file @ dcbb51e6
...@@ -101,16 +101,20 @@ rule finish: ...@@ -101,16 +101,20 @@ rule finish:
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"ALFA_plots.Biotypes.pdf"), "{unique_type}",
"ALFA_plots.Categories.pdf"),
zip, zip,
sample= [i for i in list(samples_table.index.values)], sample= [i for i in list(samples_table.index.values)],
seqmode= [ seqmode= [
samples_table.loc[i,"seqmode"] samples_table.loc[i,"seqmode"]
for i in list(samples_table.index.values)]), for i in list(samples_table.index.values)],
alfa_all_samples = os.path.join( unique_type = ["Unique", "UniqueMultiple"]),
alfa_all_samples = expand(os.path.join(
config["output_dir"], config["output_dir"],
"ALFA", "ALFA",
"ALFA_plots.Categories.pdf") "{unique_type}",
"ALFA_plots.Categories.pdf"),
unique_type = ["Unique", "UniqueMultiple"]),
...@@ -460,13 +464,13 @@ rule rename_star_rpm_for_alfa: ...@@ -460,13 +464,13 @@ rule rename_star_rpm_for_alfa:
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"STAR_coverage", "STAR_coverage",
"{sample}_Signal.UniqueMultiple.str1.out.bg"), "{sample}_Signal.{unique}.str1.out.bg"),
str2 = os.path.join( str2 = os.path.join(
config["output_dir"], config["output_dir"],
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"STAR_coverage", "STAR_coverage",
"{sample}_Signal.UniqueMultiple.str2.out.bg") "{sample}_Signal.{unique}.str2.out.bg")
output: output:
plus = os.path.join( plus = os.path.join(
...@@ -474,13 +478,15 @@ rule rename_star_rpm_for_alfa: ...@@ -474,13 +478,15 @@ rule rename_star_rpm_for_alfa:
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{sample}_Signal.UniqueMultiple.out.plus.bg"), "{unique}",
"{sample}_Signal.{unique}.out.plus.bg"),
minus = os.path.join( minus = os.path.join(
config["output_dir"], config["output_dir"],
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{sample}_Signal.UniqueMultiple.out.minus.bg") "{unique}",
"{sample}_Signal.{unique}.out.minus.bg")
params: params:
orientation = lambda wildcards: samples_table.loc[wildcards.sample, "kallisto_directionality"] orientation = lambda wildcards: samples_table.loc[wildcards.sample, "kallisto_directionality"]
...@@ -825,13 +831,15 @@ rule alfa_qc: ...@@ -825,13 +831,15 @@ rule alfa_qc:
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{sample}_Signal.UniqueMultiple.out.plus.bg"), "{unique}",
"{sample}_Signal.{unique}.out.plus.bg"),
minus = os.path.join( minus = os.path.join(
config["output_dir"], config["output_dir"],
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{sample}_Signal.UniqueMultiple.out.minus.bg"), "{unique}",
"{sample}_Signal.{unique}.out.minus.bg"),
gtf = lambda wildcards: os.path.join(config["alfa_indexes"], gtf = lambda wildcards: os.path.join(config["alfa_indexes"],
samples_table.loc[wildcards.sample, "organism"], samples_table.loc[wildcards.sample, "organism"],
str(samples_table.loc[wildcards.sample, "index_size"]), str(samples_table.loc[wildcards.sample, "index_size"]),
...@@ -844,18 +852,21 @@ rule alfa_qc: ...@@ -844,18 +852,21 @@ rule alfa_qc:
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{unique}",
"ALFA_plots.Biotypes.pdf"), "ALFA_plots.Biotypes.pdf"),
categories = os.path.join( categories = os.path.join(
config["output_dir"], config["output_dir"],
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{unique}",
"ALFA_plots.Categories.pdf"), "ALFA_plots.Categories.pdf"),
table = os.path.join( table = os.path.join(
config["output_dir"], config["output_dir"],
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"ALFA", "ALFA",
"{unique}",
"{sample}.ALFA_feature_counts.tsv") "{sample}.ALFA_feature_counts.tsv")
params: params:
...@@ -874,7 +885,7 @@ rule alfa_qc: ...@@ -874,7 +885,7 @@ rule alfa_qc:
config["log_dir"], config["log_dir"],
"{seqmode}", "{seqmode}",
"{sample}", "{sample}",
"alfa_qc.log")) "alfa_qc.{unique}.log"))
shell: shell:
""" """
...@@ -893,6 +904,7 @@ rule alfa_qc_all_samples: ...@@ -893,6 +904,7 @@ rule alfa_qc_all_samples:
samples_table.loc[sample1, "seqmode"], samples_table.loc[sample1, "seqmode"],
str(sample1), str(sample1),
"ALFA", "ALFA",
"{unique}",
sample1 + ".ALFA_feature_counts.tsv") sample1 + ".ALFA_feature_counts.tsv")
for sample1 in list(samples_table.index.values)] for sample1 in list(samples_table.index.values)]
...@@ -900,10 +912,12 @@ rule alfa_qc_all_samples: ...@@ -900,10 +912,12 @@ rule alfa_qc_all_samples:
biotypes = os.path.join( biotypes = os.path.join(
config["output_dir"], config["output_dir"],
"ALFA", "ALFA",
"{unique}",
"ALFA_plots.Biotypes.pdf"), "ALFA_plots.Biotypes.pdf"),
categories = os.path.join( categories = os.path.join(
config["output_dir"], config["output_dir"],
"ALFA", "ALFA",
"{unique}",
"ALFA_plots.Categories.pdf") "ALFA_plots.Categories.pdf")
params: params:
...@@ -912,7 +926,7 @@ rule alfa_qc_all_samples: ...@@ -912,7 +926,7 @@ rule alfa_qc_all_samples:
log: log:
os.path.abspath( os.path.abspath(
os.path.join(config["log_dir"], os.path.join(config["log_dir"],
"alfa_qc_all_samples.log")) "alfa_qc_all_samples.{unique}.log"))
singularity: singularity:
"docker://zavolab/alfa:1.1.1" "docker://zavolab/alfa:1.1.1"
......
tests/test_alfa/expected_output.md5
+ 24
− 12
View file @ dcbb51e6
90e42aa46890e9cd0a47800428699fbf results/alfa_indexes/homo_sapiens/75/ALFA/sorted_genes.stranded.ALFA_index 90e42aa46890e9cd0a47800428699fbf results/alfa_indexes/homo_sapiens/75/ALFA/sorted_genes.stranded.ALFA_index
ccc3cf5a57fddb0d469e597d4376b1bf results/alfa_indexes/homo_sapiens/75/ALFA/sorted_genes.unstranded.ALFA_index ccc3cf5a57fddb0d469e597d4376b1bf results/alfa_indexes/homo_sapiens/75/ALFA/sorted_genes.unstranded.ALFA_index
e5959524a2daf35da9249fb313920315 results/paired_end/paired_end_R1_on_minus_antisense/ALFA/Unique/paired_end_R1_on_minus_antisense.ALFA_feature_counts.tsv
c406c1800d3690dd774aaa7e3c190523 results/paired_end/paired_end_R1_on_minus_sense/ALFA/Unique/paired_end_R1_on_minus_sense.ALFA_feature_counts.tsv
c406c1800d3690dd774aaa7e3c190523 results/paired_end/paired_end_R1_on_plus_antisense/ALFA/Unique/paired_end_R1_on_plus_antisense.ALFA_feature_counts.tsv
e5959524a2daf35da9249fb313920315 results/paired_end/paired_end_R1_on_plus_sense/ALFA/Unique/paired_end_R1_on_plus_sense.ALFA_feature_counts.tsv
e5959524a2daf35da9249fb313920315 results/paired_end/paired_end_R1_on_minus_antisense/ALFA/UniqueMultiple/paired_end_R1_on_minus_antisense.ALFA_feature_counts.tsv
c406c1800d3690dd774aaa7e3c190523 results/paired_end/paired_end_R1_on_minus_sense/ALFA/UniqueMultiple/paired_end_R1_on_minus_sense.ALFA_feature_counts.tsv
c406c1800d3690dd774aaa7e3c190523 results/paired_end/paired_end_R1_on_plus_antisense/ALFA/UniqueMultiple/paired_end_R1_on_plus_antisense.ALFA_feature_counts.tsv
e5959524a2daf35da9249fb313920315 results/paired_end/paired_end_R1_on_plus_sense/ALFA/UniqueMultiple/paired_end_R1_on_plus_sense.ALFA_feature_counts.tsv
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/ALFA/UniqueMultiple/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.out.minus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_antisense/ALFA/UniqueMultiple/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.out.plus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_sense/ALFA/UniqueMultiple/paired_end_R1_on_minus_sense_Signal.UniqueMultiple.out.minus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_sense/ALFA/UniqueMultiple/paired_end_R1_on_minus_sense_Signal.UniqueMultiple.out.plus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_antisense/ALFA/UniqueMultiple/paired_end_R1_on_plus_antisense_Signal.UniqueMultiple.out.minus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_antisense/ALFA/UniqueMultiple/paired_end_R1_on_plus_antisense_Signal.UniqueMultiple.out.plus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/ALFA/UniqueMultiple/paired_end_R1_on_plus_sense_Signal.UniqueMultiple.out.minus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_sense/ALFA/UniqueMultiple/paired_end_R1_on_plus_sense_Signal.UniqueMultiple.out.plus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/ALFA/Unique/paired_end_R1_on_minus_antisense_Signal.Unique.out.minus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_antisense/ALFA/Unique/paired_end_R1_on_minus_antisense_Signal.Unique.out.plus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_sense/ALFA/Unique/paired_end_R1_on_minus_sense_Signal.Unique.out.minus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_sense/ALFA/Unique/paired_end_R1_on_minus_sense_Signal.Unique.out.plus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_antisense/ALFA/Unique/paired_end_R1_on_plus_antisense_Signal.Unique.out.minus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_antisense/ALFA/Unique/paired_end_R1_on_plus_antisense_Signal.Unique.out.plus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/ALFA/Unique/paired_end_R1_on_plus_sense_Signal.Unique.out.minus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_sense/ALFA/Unique/paired_end_R1_on_plus_sense_Signal.Unique.out.plus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/STAR_coverage/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.str1.out.bg 5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/STAR_coverage/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.str1.out.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_antisense/STAR_coverage/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.str2.out.bg 8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_antisense/STAR_coverage/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.str2.out.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/STAR_coverage/paired_end_R1_on_minus_antisense_Signal.Unique.str1.out.bg 5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/STAR_coverage/paired_end_R1_on_minus_antisense_Signal.Unique.str1.out.bg
...@@ -16,15 +40,3 @@ ccc3cf5a57fddb0d469e597d4376b1bf results/alfa_indexes/homo_sapiens/75/ALFA/sort ...@@ -16,15 +40,3 @@ ccc3cf5a57fddb0d469e597d4376b1bf results/alfa_indexes/homo_sapiens/75/ALFA/sort
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/STAR_coverage/paired_end_R1_on_plus_sense_Signal.UniqueMultiple.str2.out.bg 5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/STAR_coverage/paired_end_R1_on_plus_sense_Signal.UniqueMultiple.str2.out.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_sense/STAR_coverage/paired_end_R1_on_plus_sense_Signal.Unique.str1.out.bg 8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_sense/STAR_coverage/paired_end_R1_on_plus_sense_Signal.Unique.str1.out.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/STAR_coverage/paired_end_R1_on_plus_sense_Signal.Unique.str2.out.bg 5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/STAR_coverage/paired_end_R1_on_plus_sense_Signal.Unique.str2.out.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_antisense/ALFA/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.out.minus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_antisense/ALFA/paired_end_R1_on_minus_antisense_Signal.UniqueMultiple.out.plus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_minus_sense/ALFA/paired_end_R1_on_minus_sense_Signal.UniqueMultiple.out.minus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_minus_sense/ALFA/paired_end_R1_on_minus_sense_Signal.UniqueMultiple.out.plus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_antisense/ALFA/paired_end_R1_on_plus_antisense_Signal.UniqueMultiple.out.minus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_antisense/ALFA/paired_end_R1_on_plus_antisense_Signal.UniqueMultiple.out.plus.bg
5e90c760710980f4f4866dbe9aa32c6c results/paired_end/paired_end_R1_on_plus_sense/ALFA/paired_end_R1_on_plus_sense_Signal.UniqueMultiple.out.minus.bg
8e23d52d7f635d927e292174f33168eb results/paired_end/paired_end_R1_on_plus_sense/ALFA/paired_end_R1_on_plus_sense_Signal.UniqueMultiple.out.plus.bg
e5959524a2daf35da9249fb313920315 results/paired_end/paired_end_R1_on_minus_antisense/ALFA/paired_end_R1_on_minus_antisense.ALFA_feature_counts.tsv
c406c1800d3690dd774aaa7e3c190523 results/paired_end/paired_end_R1_on_minus_sense/ALFA/paired_end_R1_on_minus_sense.ALFA_feature_counts.tsv
c406c1800d3690dd774aaa7e3c190523 results/paired_end/paired_end_R1_on_plus_antisense/ALFA/paired_end_R1_on_plus_antisense.ALFA_feature_counts.tsv
e5959524a2daf35da9249fb313920315 results/paired_end/paired_end_R1_on_plus_sense/ALFA/paired_end_R1_on_plus_sense.ALFA_feature_counts.tsv
tests/test_alfa/test.sh
+ 2
− 1
View file @ dcbb51e6
...@@ -33,7 +33,8 @@ snakemake \ ...@@ -33,7 +33,8 @@ snakemake \
--use-singularity \ --use-singularity \
--singularity-args="--bind ${PWD}/../input_files" \ --singularity-args="--bind ${PWD}/../input_files" \
--verbose \ --verbose \
results/ALFA/ALFA_plots.Categories.pdf results/ALFA/UniqueMultiple/ALFA_plots.Categories.pdf \
results/ALFA/Unique/ALFA_plots.Categories.pdf
# Check md5 sum of some output files # Check md5 sum of some output files
find results/ -type f -name \*\.gz -exec gunzip '{}' \; find results/ -type f -name \*\.gz -exec gunzip '{}' \;
......
tests/test_integration_workflow/expected_output.md5
+ 15
− 9
View file @ dcbb51e6
...@@ -78,6 +78,21 @@ e72f5d798c99272f8c0166dc77247db1 results/single_end/synthetic_10_reads_mate_1_s ...@@ -78,6 +78,21 @@ e72f5d798c99272f8c0166dc77247db1 results/single_end/synthetic_10_reads_mate_1_s
92bcd0592d22a6a58d0360fc76103e56 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/salmon_quant/aux_info/observed_bias 92bcd0592d22a6a58d0360fc76103e56 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/salmon_quant/aux_info/observed_bias
92bcd0592d22a6a58d0360fc76103e56 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/salmon_quant/aux_info/observed_bias_3p 92bcd0592d22a6a58d0360fc76103e56 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/salmon_quant/aux_info/observed_bias_3p
d41d8cd98f00b204e9800998ecf8427e results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/salmon_quant/aux_info/unmapped_names.txt d41d8cd98f00b204e9800998ecf8427e results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/salmon_quant/aux_info/unmapped_names.txt
3ce47cb1d62482c5d62337751d7e8552 results/transcriptome/homo_sapiens/transcriptome.fa
6b44c507f0a1c9f7369db0bb1deef0fd results/alfa_indexes/homo_sapiens/75/ALFA/sorted_genes.stranded.ALFA_index
2caebc23faf78fdbbbdbb118d28bd6b5 results/alfa_indexes/homo_sapiens/75/ALFA/sorted_genes.unstranded.ALFA_index
c1254a0bae19ac3ffc39f73099ffcf2b results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/ALFA/Unique/synthetic_10_reads_paired_synthetic_10_reads_paired.ALFA_feature_counts.tsv
c1254a0bae19ac3ffc39f73099ffcf2b results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/ALFA/Unique/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1.ALFA_feature_counts.tsv
c266d31e0a2ad84975cb9de335891e64 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/ALFA/Unique/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.Unique.out.minus.bg
0139e75ddbfe6eb081c2c2d9b9108ab4 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/ALFA/Unique/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.Unique.out.plus.bg
bcccf679a8c083d01527514c9f5680a0 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/ALFA/Unique/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1_Signal.Unique.out.minus.bg
ea91b4f85622561158bff2f7c9c312b3 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/ALFA/Unique/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1_Signal.Unique.out.plus.bg
c1254a0bae19ac3ffc39f73099ffcf2b results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/ALFA/UniqueMultiple/synthetic_10_reads_paired_synthetic_10_reads_paired.ALFA_feature_counts.tsv
c1254a0bae19ac3ffc39f73099ffcf2b results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/ALFA/UniqueMultiple/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1.ALFA_feature_counts.tsv
c266d31e0a2ad84975cb9de335891e64 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/ALFA/UniqueMultiple/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.UniqueMultiple.out.minus.bg
0139e75ddbfe6eb081c2c2d9b9108ab4 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/ALFA/UniqueMultiple/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.UniqueMultiple.out.plus.bg
bcccf679a8c083d01527514c9f5680a0 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/ALFA/UniqueMultiple/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1_Signal.UniqueMultiple.out.minus.bg
ea91b4f85622561158bff2f7c9c312b3 results/single_end/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1/ALFA/UniqueMultiple/synthetic_10_reads_mate_1_synthetic_10_reads_mate_1_Signal.UniqueMultiple.out.plus.bg
0139e75ddbfe6eb081c2c2d9b9108ab4 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/STAR_coverage/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.UniqueMultiple.str1.out.bg 0139e75ddbfe6eb081c2c2d9b9108ab4 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/STAR_coverage/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.UniqueMultiple.str1.out.bg
c266d31e0a2ad84975cb9de335891e64 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/STAR_coverage/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.UniqueMultiple.str2.out.bg c266d31e0a2ad84975cb9de335891e64 results/paired_end/synthetic_10_reads_paired_synthetic_10_reads_paired/STAR_coverage/synthetic_10_reads_paired_synthetic_10_reads_paired_Signal.UniqueMultiple.str2.out.bg
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