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Commit f866451a authored by Maria Katsantoni's avatar Maria Katsantoni
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Removed expand in rule alfa_qc

parent 40505299
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1 merge request!102Change alfa output folder names
Pipeline #13063 failed
......@@ -1486,30 +1486,24 @@ rule alfa_qc:
'''
input:
plus = lambda wildcards:
expand(
os.path.join(
config["output_dir"],
"samples",
"{sample}",
"ALFA",
"{unique}",
"{sample}.{unique}.plus.bg"),
sample=wildcards.sample,
unique=alfa_dict[wildcards.renamed_unique]
os.path.join(
config["output_dir"],
"samples",
wildcards.sample,
"ALFA",
alfa_dict[wildcards.renamed_unique],
wildcards.sample + "." + alfa_dict[wildcards.renamed_unique] + ".plus.bg"
),
minus = lambda wildcards:
expand(
os.path.join(
config["output_dir"],
"samples",
"{sample}",
"ALFA",
"{unique}",
"{sample}.{unique}.minus.bg"),
sample=wildcards.sample,
unique=alfa_dict[wildcards.renamed_unique]
),
os.path.join(
config["output_dir"],
"samples",
wildcards.sample,
"ALFA",
alfa_dict[wildcards.renamed_unique],
wildcards.sample + "." + alfa_dict[wildcards.renamed_unique] + ".minus.bg"
),
gtf = lambda wildcards:
os.path.join(
......
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