Skip to content
Snippets Groups Projects
  1. Oct 16, 2020
  2. Jun 23, 2020
  3. Jun 12, 2020
  4. Apr 28, 2020
    • Alex Kanitz's avatar
      Extend workflow description · 80453305
      Alex Kanitz authored
      - add linked ToC
      - add table of third party software
      - add rule graph
      - clean up sample table description
      - formalize structure for each rule description
      - cross-reference rules via inputs/outputs
      - clean list of references
      80453305
  5. Apr 27, 2020
  6. Mar 25, 2020
  7. Mar 20, 2020
    • BIOPZ-Katsantoni Maria's avatar
      update of documentation · 46689ffd
      BIOPZ-Katsantoni Maria authored
      46689ffd
    • BIOPZ-Katsantoni Maria's avatar
      Fix Poly(A)-trimming rule · 392b04d2
      BIOPZ-Katsantoni Maria authored and Alex Kanitz's avatar Alex Kanitz committed
      In labkey_to_snakemake.py fixed the parameters so that there is 3p as well 5p polya
      feature for every mate, which can be matched to the -a -g -A and -G options of cutadapt
      depending on which is the sense or antisense mate the appropriate variable is populated
      and the rest of variables are filled with 'XXXXXXXXXXXX' which leads to no trimming by
      cutadapt. The poly-A trimming rules are fixed to contain all -a -g -A -G options.
      392b04d2
  8. Mar 19, 2020
  9. Mar 13, 2020
Loading