Commits · master · zavolan_group / tools / Transcript sequence extractor · GitLab

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Sep 19, 2023
- refactor: update setup.py, delete files · c3debb20
  Mate Balajti authored 1 year ago
  
  c3debb20
Sep 13, 2023
- feat: clean code, combine scripts, add tests · 1578448c
  Mate Balajti authored 1 year ago
  
  1578448c
Dec 14, 2022
- minor change · 4e1dac07
  Samuel Mondal authored 2 years ago
  
  4e1dac07
- minor change · 4c361f1c
  Samuel Mondal authored 2 years ago
  
  4c361f1c
- minor changes 2 · 7cad2097
  Samuel Mondal authored 2 years ago
  
  7cad2097
- minor changes · ca797e26
  Samuel Mondal authored 2 years ago
  
  ca797e26
- Add actual tests to the test file · 5f9aa7fd
  Samuel Mondal authored 2 years ago
  
  5f9aa7fd
Dec 13, 2022
- yml file edit · 515f1f94
  Samuel Mondal authored 2 years ago
  
  515f1f94
- dockerfile addition · ca6f0fa2
  Samuel Mondal authored 2 years ago
  
  ca6f0fa2
- changes made by black · 6ebd862e
  Samuel Mondal authored 2 years ago
  
  6ebd862e
- minor changes based on pylint · 3d754385
  Samuel Mondal authored 2 years ago
  
  3d754385
- error correction · 6f5e54c4
  Samuel Mondal authored 2 years ago
  
  6f5e54c4
- made a directory for pre-bedtools script · b85dc7c2
  Samuel Mondal authored 2 years ago
  
  b85dc7c2
- minor changes to directory structure · 367f7bfc
  Samuel Mondal authored 2 years ago
  
  367f7bfc
- reducing the scope of cli.py to work only after bedtools · 50a21532
  Samuel Mondal authored 2 years ago
  
  50a21532
- final changes to srtup.py · 22146b82
  Samuel Mondal authored 2 years ago
  
  22146b82
Dec 12, 2022
- updated gitignore (inspired by other groups) · d61d7713
  Samuel Mondal authored 2 years ago
  
  d61d7713
- bedtool addition to environment file · 78aabc72
  Samuel Mondal authored 2 years ago
  
  78aabc72
- version addition · aa5b90cb
  Samuel Mondal authored 2 years ago
  
  aa5b90cb
- version addition · 05d1a916
  Samuel Mondal authored 2 years ago
  
  05d1a916
- requirements txt addition · 30c197b2
  Samuel Mondal authored 2 years ago
  
  30c197b2
- edits to pre_bedtools · f0569652
  Samuel Mondal authored 2 years ago
  
  f0569652
- Prebedtools script to sort exons per strand type · 98bc811b
  Gina authored 2 years ago
  
  98bc811b
Dec 08, 2022
- Replacing placeholder probability values · ccde0764
  Samuel Mondal authored 2 years ago
  
  ccde0764
Dec 04, 2022
- updated README file · a31e8b49
  Ahmed Hassan Hussein Hefny Mahmoud authored 2 years ago
  
  a31e8b49
- updated ReadMe file · bf19db72
  Ahmed Hassan Hussein Hefny Mahmoud authored 2 years ago
  
  bf19db72
Nov 28, 2022
- test file created for exon concatenator function · 7ba23f45
  Samuel Mondal authored 2 years ago
  
  7ba23f45
- renaming to conform to PEP · 8512a692
  Samuel Mondal authored 2 years ago
  
  8512a692
- renaming module · f4b5de9a
  Samuel Mondal authored 2 years ago
  
  f4b5de9a
- function name change · 83fc6e1a
  Samuel Mondal authored 2 years ago
  
  83fc6e1a
- corrections · 324c44c4
  Samuel Mondal authored 2 years ago
  
  324c44c4
- requirements_dev.txt · d26f0f28
  Samuel Mondal authored 2 years ago
  
  d26f0f28
Nov 26, 2022
- updated docstrings · 2e931137
  Samuel Mondal authored 2 years ago
  
  2e931137
- Changing to a list of tuples (much more simplified) · 834f7fbc
  Samuel Mondal authored 2 years ago
  
  834f7fbc
- Changing output from a list to a list of tuples · 6adfc082
  Samuel Mondal authored 2 years ago
  
  6adfc082
- Removal of old function from script · 319c242f
  Samuel Mondal authored 2 years ago
  
  319c242f
- New function that reads fasta file one line at a time rather than loading the whole file · 501332df
  Samuel Mondal authored 2 years ago
  
  501332df
- Update cli (still not complete) · 5ab12718
  Samuel Mondal authored 2 years ago
  
  5ab12718
- Added a new function for proper polyA addition · 2e508d8a
  Samuel Mondal authored 2 years ago
  
  2e508d8a
- working code · 5f630a15
  Samuel Mondal authored 2 years ago
  
  5f630a15