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Transcript sequence extractor
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zavolan_group
tools
Transcript sequence extractor
Commits
7cad2097
Commit
7cad2097
authored
2 years ago
by
Samuel Mondal
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minor changes 2
parent
ca797e26
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!67
minor changes 2
Pipeline
#14928
failed
2 years ago
Stage: build
Stage: test
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sequence_extractor/cli.py
+1
-1
1 addition, 1 deletion
sequence_extractor/cli.py
sequence_extractor/poly_a.py
+2
-1
2 additions, 1 deletion
sequence_extractor/poly_a.py
with
3 additions
and
2 deletions
sequence_extractor/cli.py
+
1
−
1
View file @
7cad2097
"""
command line script to be run on output fasta file from bedtools getfasta
"""
"""
command line script to be run on output fasta file from bedtools getfasta
.
"""
import
argparse
import
argparse
import
logging
import
logging
from
exon_concatenation
import
exon_concatenation
from
exon_concatenation
import
exon_concatenation
...
...
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sequence_extractor/poly_a.py
+
2
−
1
View file @
7cad2097
"""
This script contains two functions and the first function is called by the second function and used to add poly A tail to the concatenated exon.
"""
"""
This script contains two functions and the first function is called by the second function and used to add poly A tail to the concatenated exon.
"""
s
import
numpy
as
np
import
numpy
as
np
# To do: Taking probabilities of nucleotides from user and raising error if sum != 1
# To do: Taking probabilities of nucleotides from user and raising error if sum != 1
def
poly_a_generator
(
def
poly_a_generator
(
exon
:
str
,
exon
:
str
,
)
->
str
:
)
->
str
:
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