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Commit 7409d11c authored by Andri Fränkl's avatar Andri Fränkl
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Update README.md

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...@@ -39,7 +39,7 @@ To generate the sampled transcripts, open a new shell, activate your environment ...@@ -39,7 +39,7 @@ To generate the sampled transcripts, open a new shell, activate your environment
``` ```
conda activate transcript-structure-generator conda activate transcript-structure-generator
transcript-generator --prob_inclusion <probability_inclusion> [--log "INFO"] <transcripts_file> <annotations_file> transcript-generator --prob-inclusion <probability_inclusion> [--log "INFO"] <transcripts_file> <annotations_file>
``` ```
where the transcripts file should be csv-formatted, the annotation file gtf-formatted and the inclusion probability for introns a float in the range [0,1]. The log parameter is optional and can be one of `["CRITICAL", "ERROR", "WARNING", "INFO", "DEBUG"]`. The default is `INFO`. where the transcripts file should be csv-formatted, the annotation file gtf-formatted and the inclusion probability for introns a float in the range [0,1]. The log parameter is optional and can be one of `["CRITICAL", "ERROR", "WARNING", "INFO", "DEBUG"]`. The default is `INFO`.
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