Commits · c29d1c8500e8b826a745893ddd5f74650ab304f3 · zavolan_public / PAQR_KAPAC · GitLab

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Oct 16, 2019
- bugfixed indent problem in... · c29d1c85
  BIOPZ-Schmidt Ralf authored 5 years ago
  c29d1c85
Aug 23, 2019
- updated python3 env install procedure · e58b36c0
  BIOPZ-Schmidt Ralf authored 5 years ago
  
  e58b36c0
Jan 16, 2019
- added pymongo package to requirements file of the py2 environment · 6408baf5
  BIOPZ-Schmidt Ralf authored 6 years ago
  
  6408baf5
Jan 15, 2019
- added annotation files for mm10 in PAQR/data/annotation · 0e479784
  BIOPZ-Schmidt Ralf authored 6 years ago
  
  0e479784
Aug 12, 2018
- added version for R as used in the conda env · 7214d93b
  BIOPZ-Schmidt Ralf authored 6 years ago
  
  7214d93b
- updated typos and git clone address in README;changed r-essentials for... · c6df2f01
  BIOPZ-Schmidt Ralf authored 6 years ago
  c6df2f01
Jan 10, 2018
- included an additional github repo for pushes only · ae820964
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  ae820964
- added GNU v2 license · f7084210
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  f7084210
- included header lines in pas_expression and distal_pas files · b1e12ef4
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  b1e12ef4
Jan 08, 2018
- added information on the origin of calculate-TIN-values.py in the header of this script · 419a9025
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  419a9025
Dec 20, 2017
- updated relative usage inference script to include the reporting of single distal sites · 380bc1d3
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  380bc1d3
Dec 01, 2017
- updated PAQR with latest relative usage inference script · 9cec9d8b
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  9cec9d8b
Nov 29, 2017
- Added references and simplified code. · 3780e07e
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  3780e07e
Nov 27, 2017
- Cleaned-up code parts. · 9a2ef1ba
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  9a2ef1ba
- Fit update. · df71fbb4
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  df71fbb4
Nov 17, 2017
- fixed small bug in create-coverage script: now, it is ensured that always a... · 8bae51c1
  BIOPZ-Schmidt Ralf authored 7 years ago
  8bae51c1
Nov 09, 2017
- modified plot-ecdfs.R to be more generic · e6d1788d
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  e6d1788d
- bug fix return value for get_relative_usage in deNovo-used-sites-and-usage-inference.py · f625bd61
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  f625bd61
Nov 08, 2017
- updated part_one.Snakefile · 50172680
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  50172680
- updated localrules for Snakefiles · 212e601f
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  212e601f
Oct 17, 2017
- updated requirements for PARQ README · f6383d7e
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  f6383d7e
Oct 06, 2017
- tutorial for PAQR added · dbcb4cea
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  dbcb4cea
- modified global README and PAQR README · d6265739
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  d6265739
Sep 29, 2017
- KAPAC.R help and README.md updated. · 2ba5bc90
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  2ba5bc90
- Simplified the design file and updated the README.md file. · f849061e
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  f849061e
- Removed option '--pas_overlap_col' and fixed the column name to 'PAS_overlap'. · 90afedcc
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  90afedcc
- Changed warning messages to R warnings(). · 8c6ce469
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  8c6ce469
- Runs without randomization when choosing a small number of randomized runs. · b691580d
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  b691580d
- Updated KAPAC.R for detault values and removed file writing for k-mers with no... · 963f3c64
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  963f3c64
- Updated .gitignore · 54300b17
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  54300b17
- Extended documentation of KAPAC.R · 7b2a6396
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  7b2a6396
Sep 28, 2017
- Added KAPAC. · 3950d5ea
  BIOPZ-Gruber Andreas (2) authored 7 years ago
  
  3950d5ea
Sep 26, 2017
- first version of PAQR part_two pipeline · 5ad05ed0
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  5ad05ed0
Sep 25, 2017
- first part of PAQR (untested); README files extended · 85c51342
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  85c51342
- initialization II · 454e3dc9
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  454e3dc9
- Initial commit · e66f76fa
  BIOPZ-Schmidt Ralf authored 7 years ago
  
  e66f76fa