call plot only if stop = 0

Treemmer.py

@@ -17,7 +17,7 @@
 #    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 
-# You have to install ete3 http://etetoolkit.org/download/
+# You have to install ete3 http://etetoolkit.org/
 # and joblib https://pythonhosted.org/joblib/ to run Treemmer
 
 
@@ -399,19 +399,19 @@ if stop == 0:														# create file for plot of rltd
 
 
 #################################################  make plot  directly ##########################################################
-if not arguments.no_plot:
-	import numpy as np
-	import matplotlib.pyplot as plt
-	from matplotlib.ticker import MaxNLocator
-	ax = plt.figure().gca()
-	ax.xaxis.set_major_locator(MaxNLocator(integer=True))	
-	plt.scatter(x, y, s= 2, c= 'black')
-	plt.xlim(ori_length,0)
-	plt.ylim(-0.02,1.02)
-	plt.xlabel('Number of leaves')
-	plt.ylabel('Relative tree length')
-	#plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.png')
-	plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.pdf')			
+	if not arguments.no_plot:
+		import numpy as np
+		import matplotlib.pyplot as plt
+		from matplotlib.ticker import MaxNLocator
+		ax = plt.figure().gca()
+		ax.xaxis.set_major_locator(MaxNLocator(integer=True))	
+		plt.scatter(x, y, s= 2, c= 'black')
+		plt.xlim(ori_length,0)
+		plt.ylim(-0.02,1.02)
+		plt.xlabel('Number of leaves')
+		plt.ylabel('Relative tree length')
+		#plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.png')
+		plt.savefig(arguments.INFILE+'_res_'+ str(arguments.resolution)+'_TLD.pdf')