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Open-Source Computational Structural Biology Framework

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

Extract ligand and binding site information from PDB X-ray validation reports

ProMod3 - A Versatile Homology Modelling Toolbox

Mobius - A python package for peptide optimization using Bayesian optimization

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

General purpose Snakemake RNA-seq analysis workflow

Material and data for the workshop in South Africa (2018)

QMEAN - Qualitative Model Energy ANalysis

drugsens is a R-package that allows users to automatically analyze QuPath™ output data from imaging analysis