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Open-Source Computational Structural Biology Framework

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

ProMod3 - A Versatile Homology Modelling Toolbox

Material and data for the workshop in South Africa (2018)

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

General purpose Snakemake RNA-seq analysis workflow

QMEAN - Qualitative Model Energy ANalysis

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

Pattern Recognition 2023

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

Data integration and annotation workflows

Pathways allows you to compute importance scores for a a list of metabolic pathways.

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

Associated publication: https://doi.org/10.3389/fmicb.2021.633396

Tools to import models of the Wilkins group (Tara) to ModelArchive