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Commit 811cdd74 authored by Kai Schleicher's avatar Kai Schleicher
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Precises comment

parent db261db2
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1 merge request!2Initial commit
...@@ -757,10 +757,10 @@ processing_channels = processing_channels_string.split(",") ...@@ -757,10 +757,10 @@ processing_channels = processing_channels_string.split(",")
quality_thresholds_string = quality_thresholds_string.replace(" ", "") quality_thresholds_string = quality_thresholds_string.replace(" ", "")
quality_thresholds = quality_thresholds_string.split(",") quality_thresholds = quality_thresholds_string.split(",")
# Get the fiber segmentation and convert to labelimage # Get the fiber segmentation from ij roizip and convert to labelimage
canvas = create_empty_image(32, image_width, image_height) canvas = create_empty_image(32, image_width, image_height)
load_rois_from_zip(fiber_segmentation_roiset) load_rois_from_zip(fiber_segmentation_roiset)
fiber_label_imp = convert_rois_to_labelimage(canvas) fibers_label_imp = convert_rois_to_labelimage(canvas)
canvas.close() canvas.close()
# threshold DAPI channel and convert to binary # threshold DAPI channel and convert to binary
......
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