Commits · 8c384c68fe0ea7d73655a6e58bdec46a78f2d868 · imcf / myosoft-imcf

Dec 11, 2024

WIP · 8c384c68

Laurent Guerard authored 3 months ago

Script is working but segmentation results aren't perfect, maybe keeping
the pre processing step is needed.
To continue

8c384c68

Feb 03, 2023
- fix bug that expected a certain channel sequence · 7003049f
  Kai Schleicher authored 2 years ago
  
  changed result table column and file naming accordingly
  7003049f
Apr 19, 2022
- Add Zenodo DOI badge · 0432dccf
  Niko Ehrenfeuchter authored 2 years ago
  
  0432dccf
- Markdown formatting and conventions · ac3d3e7a
  Niko Ehrenfeuchter authored 2 years ago
  
  ac3d3e7a
Mar 07, 2022
- add classifiers .model files · cb46705f
  Kai Schleicher authored 3 years ago
  
  View commits for tag myosoft-imcf-1.0.0 myosoft-imcf-1.0.0
  
  cb46705f
Nov 10, 2021
- Merge branch 'fix-path-handling' into 'master' · 32f0b5b5
  Kai Schleicher authored 3 years ago
  
  more robust file naming and path handling See merge request !1
  32f0b5b5
- more robust file naming and path handling · 49a31d70
  Kai Schleicher authored 3 years ago
  
  49a31d70
Nov 19, 2020
- updates readme including informaion on script 2a · bff0bbbf
  Kai Schleicher authored 4 years ago
  
  bff0bbbf
- feature: find_nuclei function uses much more sensitive threshold method · 2a8c420f
  Kai Schleicher authored 4 years ago
  
  2a8c420f
Nov 18, 2020
- fix: fixes a bug when fetching the resultstable · f9a787e3
  Kai Schleicher authored 4 years ago
  
  f9a787e3
Nov 06, 2020
- Add LICENSE · 0cfdb1d6
  Kai Schleicher authored 4 years ago
  
  0cfdb1d6
- fix: fixed typo in folder naming · 1138b3a5
  Kai Schleicher authored 4 years ago
  
  1138b3a5
Nov 05, 2020
- renamed files according to execution sequence · 10985720
  Kai Schleicher authored 4 years ago
  
  10985720
- initial commit · 5af5c816
  Kai Schleicher authored 4 years ago
  
  5af5c816
- feature: save selected rois, reports manual threshold, removes unnecessary function · f4384868
  Kai Schleicher authored 4 years ago
  
  f4384868
- fix: fixes a bug, now reports manual threshold · 63b610b1
  Kai Schleicher authored 4 years ago
  
  63b610b1
Nov 03, 2020
- a ziped version of the Classifiers is not needed · ed6b58fa
  Kai Schleicher authored 4 years ago
  
  ed6b58fa
- each script writes its result into its own specific folder · 178666c9
  Kai Schleicher authored 4 years ago
  
  178666c9
Oct 13, 2020
- rename: renames files to indicate order of execution · e86ee6a8
  Kai Schleicher authored 4 years ago
  
  e86ee6a8
Oct 12, 2020
- feature: accepts any roi-set and only searches for central nuclei · 84fad588
  Kai Schleicher authored 4 years ago
  
  84fad588
- fix: removes unused function · 8ca6ed3a
  Kai Schleicher authored 4 years ago
  
  8ca6ed3a
- fix: fixes bugs · c63f03eb
  Kai Schleicher authored 4 years ago
  
  c63f03eb
- adds MHC pos detection · d05bc41b
  Kai Schleicher authored 4 years ago
  
  d05bc41b
Oct 09, 2020
- Update README.md · 84eef44a
  Kai Schleicher authored 4 years ago
  
  84eef44a
- Update README.md · 69959534
  Kai Schleicher authored 4 years ago
  
  69959534
- Update README.md · 37db9fbb
  Kai Schleicher authored 4 years ago
  
  37db9fbb
- removes empty folder · 72758b5e
  Kai Schleicher authored 4 years ago
  
  72758b5e
- Update README.md · c51ac6ad
  Kai Schleicher authored 4 years ago
  
  c51ac6ad
Oct 08, 2020
- initial commit · b31d6496
  Kai Schleicher authored 4 years ago
  
  b31d6496
- Add new directory · 94a25f34
  Kai Schleicher authored 4 years ago
  
  94a25f34
- initial commit · 1b83c848
  Kai Schleicher authored 4 years ago
  
  1b83c848
- initial commit · 838c9671
  Kai Schleicher authored 4 years ago
  
  838c9671
- initial commit · 6706a00d
  Kai Schleicher authored 4 years ago
  
  6706a00d
- initial commit · 83dee6e9
  Kai Schleicher authored 4 years ago
  
  83dee6e9
- Initial commit · b1959770
  Kai Schleicher authored 4 years ago
  
  b1959770