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Commit 159738ea authored by Niko Ehrenfeuchter's avatar Niko Ehrenfeuchter :keyboard:
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Add some log messages to apply_model()

parent d4d86e3d
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...@@ -38,14 +38,16 @@ def apply_model(imps, model, merge=True): ...@@ -38,14 +38,16 @@ def apply_model(imps, model, merge=True):
The merged ImagePlus with all channels, or the original list of stacks The merged ImagePlus with all channels, or the original list of stacks
with the shading-corrected image planes. with the shading-corrected image planes.
""" """
log.debug("Applying shading correction...")
calc = ij.plugin.ImageCalculator() calc = ij.plugin.ImageCalculator()
for stack in imps: for i, stack in enumerate(imps):
# log.debug("Processing channel...") log.debug("Processing channel %i...", i)
calc.run("Divide stack", stack, model) calc.run("Divide stack", stack, model)
if not merge: if not merge:
return imps return imps
log.debug("Merging shading-corrected channels...")
merger = ij.plugin.RGBStackMerge() merger = ij.plugin.RGBStackMerge()
merged_imp = merger.mergeChannels(imps, False) merged_imp = merger.mergeChannels(imps, False)
return merged_imp return merged_imp
......
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