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Commit 6cc4d272 authored by Studer Gabriel's avatar Studer Gabriel
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update containers

parent 4f009de6
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ARG OPENSTRUCTURE_IMAGE_TAG="2.2.0-bionic" ARG OPENSTRUCTURE_IMAGE_TAG="2.2.0-focal"
FROM registry.scicore.unibas.ch/schwede/openstructure:${OPENSTRUCTURE_IMAGE_TAG} FROM registry.scicore.unibas.ch/schwede/openstructure:${OPENSTRUCTURE_IMAGE_TAG}
# ARGUMENTS # ARGUMENTS
......
BootStrap: docker BootStrap: docker
From: registry.scicore.unibas.ch/schwede/promod3:3.2.0-OST2.2.0-bionic From: registry.scicore.unibas.ch/schwede/promod3:3.2.0-OST2.2.0-focal
%post %post
############################################################################## ##############################################################################
# POST # POST
...@@ -42,7 +42,7 @@ cat > $JUPYTER_PATH/kernels/ost-kernel/kernel.json <<EOF ...@@ -42,7 +42,7 @@ cat > $JUPYTER_PATH/kernels/ost-kernel/kernel.json <<EOF
"-m", "ipykernel", "-m", "ipykernel",
"-f", "{connection_file}", "-f", "{connection_file}",
"--InteractiveShellApp.exec_PYTHONSTARTUP=False", "--InteractiveShellApp.exec_PYTHONSTARTUP=False",
"--InteractiveShellApp.exec_files=['/usr/local/lib64/python3.6/site-packages/ost/ost_startup.py']" "--InteractiveShellApp.exec_files=['/usr/local/lib64/python3.8/site-packages/ost/ost_startup.py']"
], ],
"env": { "env": {
} }
...@@ -200,7 +200,7 @@ and goes to CWD. Thus this sould work as expected out of the box. ...@@ -200,7 +200,7 @@ and goes to CWD. Thus this sould work as expected out of the box.
# NOTEBOOK ENV # NOTEBOOK ENV
############################################################################## ##############################################################################
export DNG_ROOT=$OST_ROOT export DNG_ROOT=$OST_ROOT
export DNG_INITDIR=${DNG_ROOT}/lib64/python3.6/site-packages/ost export DNG_INITDIR=${DNG_ROOT}/lib64/python3.8/site-packages/ost
%apprun IPython %apprun IPython
......
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