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Commit db499ed6 authored by Studer Gabriel's avatar Studer Gabriel
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Edit README.md

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......@@ -34,9 +34,9 @@ default output (out.json):
ost compare-structures -m model.pdb -r reference.cif.gz --lddt --local-lddt --qs-score
```
An example output can be found [here](compare-structures_example_out.json) and
we refer to the action documentation for in-depth description of the provided
data items.
Results should be computed within seconds and example output can be found
[here](compare-structures_example_out.json). We refer to the action
documentation for in-depth description of the provided data items.
By default, model-reference chains are aligned using Needleman-Wunsch.
Many benchmarking efforts such as CASP and CAMEO assume residue numbers
......@@ -55,9 +55,9 @@ We can compute LDDT-PLI and BiSyRMSD with:
ost compare-ligand-structures -m model.pdb -r reference.cif.gz -ml *.sdf --rmsd --lddt-pli
```
An example output can be found [here](compare-ligand-structures_example_out.json)
and we refer to the action documentation for in-depth description of the provided
data items.
Results should be computed within seconds and example output can be found
[here](compare-ligand-structures_example_out.json). We refer to the action
documentation for in-depth description of the provided data items.
Again, it is advised to use the `-rna` flag if applicable. In this example,
reference ligands are directly extracted from the provided mmCIF file based on
......
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