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Commit db499ed6 authored by Studer Gabriel's avatar Studer Gabriel
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Edit README.md

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...@@ -34,9 +34,9 @@ default output (out.json): ...@@ -34,9 +34,9 @@ default output (out.json):
ost compare-structures -m model.pdb -r reference.cif.gz --lddt --local-lddt --qs-score ost compare-structures -m model.pdb -r reference.cif.gz --lddt --local-lddt --qs-score
``` ```
An example output can be found [here](compare-structures_example_out.json) and Results should be computed within seconds and example output can be found
we refer to the action documentation for in-depth description of the provided [here](compare-structures_example_out.json). We refer to the action
data items. documentation for in-depth description of the provided data items.
By default, model-reference chains are aligned using Needleman-Wunsch. By default, model-reference chains are aligned using Needleman-Wunsch.
Many benchmarking efforts such as CASP and CAMEO assume residue numbers Many benchmarking efforts such as CASP and CAMEO assume residue numbers
...@@ -55,9 +55,9 @@ We can compute LDDT-PLI and BiSyRMSD with: ...@@ -55,9 +55,9 @@ We can compute LDDT-PLI and BiSyRMSD with:
ost compare-ligand-structures -m model.pdb -r reference.cif.gz -ml *.sdf --rmsd --lddt-pli ost compare-ligand-structures -m model.pdb -r reference.cif.gz -ml *.sdf --rmsd --lddt-pli
``` ```
An example output can be found [here](compare-ligand-structures_example_out.json) Results should be computed within seconds and example output can be found
and we refer to the action documentation for in-depth description of the provided [here](compare-ligand-structures_example_out.json). We refer to the action
data items. documentation for in-depth description of the provided data items.
Again, it is advised to use the `-rna` flag if applicable. In this example, Again, it is advised to use the `-rna` flag if applicable. In this example,
reference ligands are directly extracted from the provided mmCIF file based on reference ligands are directly extracted from the provided mmCIF file based on
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