Commits · 5446104b1ecb354b2e00feca36483ddfb8f93f44 · schwede / openstructure · GitLab

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Oct 06, 2020
- cosmetics · 5446104b
  Studer Gabriel authored 4 years ago
  
  5446104b
Oct 05, 2020
- prototype implementation for avg local CA lddt values in a structural ensemble · 05aae294
  Studer Gabriel authored 4 years ago
  
  05aae294
Aug 06, 2020
- Residue numbers must be unique when using them to align residues to a SEQRES · 8a47dff6
  Studer Gabriel authored 4 years ago
  
  8a47dff6
Jul 30, 2020
- Disallow rnums outside SEQRES range if try_resnum_first in AlignToSEQRES · 35f0429d
  Studer Gabriel authored 4 years ago
  
  35f0429d
Jun 18, 2020
- ignore columns where both sequences have a gap - an error was thrown in such cases · d81c4dd1
  Studer Gabriel authored 4 years ago
  
  d81c4dd1
Apr 20, 2020
- Documentation for HMM functionality · 2dffa11a
  Studer Gabriel authored 5 years ago
  
  2dffa11a
- allow to adapt parameter defaults when adding transition pseudo counts · 7428aace
  Studer Gabriel authored 5 years ago
  
  7428aace
- give control over tau parameter estimation in AddAAPseudoCounts · cc61afb6
  Studer Gabriel authored 5 years ago
  
  cc61afb6
- allow to adapt parameter defaults in HMMScore · b59448d2
  Studer Gabriel authored 5 years ago
  
  b59448d2
- move null model pseudo counts into separate function · 49d815a3
  Studer Gabriel authored 5 years ago
  
  49d815a3
- add pseudo counts according to Angermueller et al. 2012 · 6bdd21ee
  Studer Gabriel authored 5 years ago
  
  6bdd21ee
- Python export for HMM algorithm · 12692e83
  Studer Gabriel authored 5 years ago
  
  12692e83
- hook up hmm algorithms in build system · b97a8e10
  Studer Gabriel authored 5 years ago
  
  b97a8e10
- algorithm that calculates an HMM-HMM alignment score the hhblits way · 65530e32
  Studer Gabriel authored 5 years ago
  
  65530e32
- Algorithms to add pseudo counts to ProfileHandle objects which contain HMM information · 910df3ae
  Studer Gabriel authored 5 years ago
  
  910df3ae
Mar 16, 2020
- make blosum data reproducible · b54d2d09
  Studer Gabriel authored 5 years ago
  b54d2d09
Feb 18, 2020
- Documentation for HMM functionality · 1ccd8359
  Studer Gabriel authored 5 years ago
  
  1ccd8359
Feb 14, 2020
- allow to adapt parameter defaults when adding transition pseudo counts · 9a4bf7c8
  Studer Gabriel authored 5 years ago
  
  9a4bf7c8
Feb 13, 2020
- give control over tau parameter estimation in AddAAPseudoCounts · dadd5fe0
  Studer Gabriel authored 5 years ago
  
  dadd5fe0
- Bum copyright to 2020 · aea78e77
  Bienchen authored 5 years ago
  
  aea78e77
- allow to adapt parameter defaults in HMMScore · c1671359
  Studer Gabriel authored 5 years ago
  
  c1671359
Feb 12, 2020
- move null model pseudo counts into separate function · d1015371
  Studer Gabriel authored 5 years ago
  
  d1015371
- add pseudo counts according to Angermueller et al. 2012 · a4246ece
  Studer Gabriel authored 5 years ago
  
  a4246ece
Feb 06, 2020
- Python export for HMM algorithm · 538d9924
  Studer Gabriel authored 5 years ago
  
  538d9924
- hook up hmm algorithms in build system · 58f5d157
  Studer Gabriel authored 5 years ago
  
  58f5d157
- algorithm that calculates an HMM-HMM alignment score the hhblits way · 67b3374a
  Studer Gabriel authored 5 years ago
  
  67b3374a
- Algorithms to add pseudo counts to ProfileHandle objects which contain HMM information · 71273e72
  Studer Gabriel authored 5 years ago
  
  71273e72
Dec 09, 2019
- Manual Python 3 port of doc example code · a3d9620b
  Studer Gabriel authored 5 years ago
  
  a3d9620b
Dec 05, 2019
- Tried to clarify AlignToSEQRES behaviour. · 47d9629d
  Gerardo Tauriello authored 5 years ago
  
  47d9629d
Dec 03, 2019
- add unit test for AlignmentFromChainView in seq.alg · 166919ad
  Studer Gabriel authored 5 years ago
  
  166919ad
Nov 15, 2019
- Fixed implicit relative import for Python modules in shared object files · b4a37afc
  Studer Gabriel authored 5 years ago
  b4a37afc
Nov 13, 2019
- Initial Python 3 port commit · 6e60b71d
  Studer Gabriel authored 5 years ago
  6e60b71d
Sep 30, 2019
- SCHWED-4328: clean up Boost includes · aef8a660
  Gerardo Tauriello authored 5 years ago
  
  aef8a660
- SCHWED-4328: remove deprecated Boost unit test usage. · 146afe38
  Gerardo Tauriello authored 5 years ago
  146afe38
Sep 03, 2019
- doc: add an example for MergePairwiseAlignments · efc89acb
  Xavier Robin authored 5 years ago
  
  Unverified
  
  efc89acb
May 22, 2019
- Document arguments and return type of MergePairwiseAlignments · d27c1eac
  Xavier Robin authored 5 years ago
  
  d27c1eac
May 14, 2019
- Fix exception message. · a5acf2d3
  Gerardo Tauriello authored 5 years ago
  
  a5acf2d3
Apr 17, 2019
- Doc fix: SemiGlobalAlign example · 73b49221
  Gerardo Tauriello authored 6 years ago
  
  73b49221
Apr 18, 2018
- feat: SCHWED-3121 Output local lDDT scores · 55082fcb
  Rafal Gumienny authored 7 years ago
  
  55082fcb
Oct 20, 2017
- Minor doc fix and include fix for compilation with some compilers. · e41c298a
  Gerardo Tauriello authored 7 years ago
  
  e41c298a