Commits · 90c9ad165392b4082fd9d3950225c512914380c2 · schwede / openstructure

Feb 17, 2020
- SCHWED-4649: Enforce new policy to get rid of -L in CMake calls · 90c9ad16
  Bienchen authored 5 years ago
  
  90c9ad16
Feb 14, 2020
- Adapt new C/ CXX_FLAGS into the CI YAML file · 002d9735
  Bienchen authored 5 years ago
  
  002d9735
Feb 13, 2020
- SCHWED-949: Updated tests for non-standard amino acids. · ad684fdb
  Gerardo Tauriello authored 5 years ago
  
  ad684fdb
- Fix doc typo · 90d766f8
  Gerardo Tauriello authored 5 years ago
  
  90d766f8
- Bum copyright to 2020 · aea78e77
  Bienchen authored 5 years ago
  
  aea78e77
- Fix/clarify use of old legacy doxygen doc · 043e9ad7
  Gerardo Tauriello authored 5 years ago
  
  043e9ad7
- Bump copyright to 2020 · 33624e06
  Bienchen authored 5 years ago
  
  33624e06
Feb 12, 2020
- SCHWED-4612: Remove a message from HHblits bindings test. · 6218e8d3
  Bienchen authored 5 years ago
  
  6218e8d3
- SCHWED-4612: Update CI Yaml file. · e07e29d8
  Bienchen authored 5 years ago
  
  e07e29d8
- SCHWED-4612: Get rid of some Numpy warnings, move from np.matrix to np.array. · f38cb6a8
  Bienchen authored 5 years ago
  
  f38cb6a8
Feb 11, 2020

SCHWED-4612: Get rid of some Numpy warnings, move from np.matrix to np.array,... · 37ab3562

Bienchen authored 5 years ago

SCHWED-4612: Get rid of some Numpy warnings, move from np.matrix to np.array, keeping the matrix variant as deprecated method.

37ab3562

Feb 10, 2020
- SCHWED-4612: Get rid of TMalign compiler warnings · b6c8152d
  Bienchen authored 5 years ago
  
  b6c8152d
- SCHWED-4382: Better logging for HHblits · c663c880
  Bienchen authored 5 years ago
  
  c663c880
- SCHWED-4612: Reduce Numpy compilation warnings · eb2a9384
  Bienchen authored 5 years ago
  
  eb2a9384
Feb 07, 2020
- slightly relax dcd io unit test · ff5e49cd
  Studer Gabriel authored 5 years ago
  
  The reason is that the check just scratches floating point accuracy and occasionally failed on some machines
  ff5e49cd
- remove openmm density plugin which has always been experimental and was never thoroughly tested · cb2f10d8
  Studer Gabriel authored 5 years ago
  
  cb2f10d8
- SCHWED-4612: Update CMake call for CI. · 23342853
  Bienchen authored 5 years ago
  
  23342853
- SCHWED-4612: Dealing with the NumPy deprecation compiler warning. · a1263ab7
  Bienchen authored 5 years ago
  
  a1263ab7
Feb 06, 2020
- SCHWED-4612: Ignore warning about unused functions by GCC, while the functions... · 910170ca
  Bienchen authored 5 years ago
  
  SCHWED-4612: Ignore warning about unused functions by GCC, while the functions are used by unit tests.
  910170ca
- SCHWED-4612: Fix warning on unused (static) function. · 4d1a5f68
  Bienchen authored 5 years ago
  
  4d1a5f68
- SCHWED-4612: Remove use of deprecated function. · 5b6da8c8
  Bienchen authored 5 years ago
  
  5b6da8c8
- SCHWED-4612: Get rid of '-Wmaybe-uninitialized' from Vec3 · d0796500
  Bienchen authored 5 years ago
  
  d0796500
Feb 05, 2020
- Try to force C++11 for older compilers. · 543a4e2c
  Gerardo Tauriello authored 5 years ago
  
  543a4e2c
Feb 03, 2020
- doc: fix indexing of ost.bindings · 1f2dae67
  Xavier Robin authored 5 years ago
  
  1f2dae67
Jan 29, 2020
- doc: document filtering of chains by qsscoring · dd7fe4f8
  Xavier Robin authored 5 years ago
  
  dd7fe4f8
Jan 17, 2020
- Replace all subprocess wait with run · 01eca901
  Andrew Waterhouse authored 5 years ago
  
  01eca901
- Subprocess wait in deadlock averted · 51225d1b
  Andrew Waterhouse authored 5 years ago
  
  51225d1b
Jan 07, 2020
- keep this as bytes Wrote abstract state sequence to · d5c9ab52
  Andrew Waterhouse authored 5 years ago
  
  d5c9ab52
Jan 02, 2020
- Read as binary in exec compile open · a00f318a
  Andrew Waterhouse authored 5 years ago
  
  a00f318a
Dec 30, 2019
- decode subprocess sout · 11d979fc
  Andrew Waterhouse authored 5 years ago
  
  11d979fc
- decode subprocess sout · 1a0f9f5b
  Andrew Waterhouse authored 5 years ago
  
  1a0f9f5b
Dec 20, 2019
- replace deprecated import · ba9dc507
  Studer Gabriel authored 5 years ago
  
  ba9dc507
- Use sphinx.application.Sphinx instead of a main function. · d78faecb
  Xavier Robin authored 5 years ago
  
  d78faecb
Dec 19, 2019
- Revert "Attempt to restore compatibility with older versions of Sphinx" · fcb8d6f4
  Xavier Robin authored 5 years ago
  
  This reverts commit ef7bfdb6. Didn't work with Sphinx 1.6.7 which needs an extra option at the start. This needs to be fixed cleanly, or we need to upgrade the Sphinx version requirements
  fcb8d6f4
- Attempt to restore compatibility with older versions of Sphinx · ef7bfdb6
  Xavier Robin authored 5 years ago
  
  ef7bfdb6
Dec 18, 2019
- Decode output of Blast to return a string with outfmt=1. · fdc51c74
  Xavier Robin authored 5 years ago
  
  fdc51c74
- Update call to sphinx to build documentation. · 0a706cba
  Xavier Robin authored 5 years ago
  
  This likely requires an up-to-date sphinx (tested with current version, 2.3.0)
  0a706cba
Dec 17, 2019
- add note on Python 2 support in install instructions · 0d69b33c
  Studer Gabriel authored 5 years ago
  
  0d69b33c
- Temporary error to remind for careful checks in versions etc. in first Python 3 release · 9f4b18eb
  Studer Gabriel authored 5 years ago
  
  9f4b18eb
Dec 16, 2019
- use buffered stdout in compare-structures · 2bf97e0f
  Studer Gabriel authored 5 years ago
  
  2bf97e0f