Commits · bd3682cbe0d1e5a538f4c7b86218759b2690ac3c · schwede / openstructure · GitLab

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Oct 28, 2020
- Added subsampling for VarianceMap/Dist2Mean/MeanlDDT. · bd3682cb
  Gerardo Tauriello authored 4 years ago
  
  bd3682cb
Oct 07, 2020
- unit test for mean lDDT calculation · 2b1ed0b9
  Studer Gabriel authored 4 years ago
  
  2b1ed0b9
- docu updates · 5780338e
  Studer Gabriel authored 4 years ago
  
  5780338e
Oct 06, 2020
- cosmetics · 584b735d
  Studer Gabriel authored 4 years ago
  
  584b735d
- export MeanlDDT data getter · db964dac
  Studer Gabriel authored 4 years ago
  
  db964dac
- cosmetics · 5446104b
  Studer Gabriel authored 4 years ago
  
  5446104b
Oct 05, 2020
- prototype implementation for avg local CA lddt values in a structural ensemble · 05aae294
  Studer Gabriel authored 4 years ago
  
  05aae294
Aug 06, 2020
- Residue numbers must be unique when using them to align residues to a SEQRES · 8a47dff6
  Studer Gabriel authored 4 years ago
  
  8a47dff6
Jul 30, 2020
- Disallow rnums outside SEQRES range if try_resnum_first in AlignToSEQRES · 35f0429d
  Studer Gabriel authored 4 years ago
  
  35f0429d
Jun 18, 2020
- ignore columns where both sequences have a gap - an error was thrown in such cases · d81c4dd1
  Studer Gabriel authored 4 years ago
  
  d81c4dd1
May 11, 2020
- set neff value when generating sub-profile · 5c4be5cf
  Studer Gabriel authored 5 years ago
  
  5c4be5cf
Apr 20, 2020
- Documentation for HMM functionality · 2dffa11a
  Studer Gabriel authored 5 years ago
  
  2dffa11a
- allow to adapt parameter defaults when adding transition pseudo counts · 7428aace
  Studer Gabriel authored 5 years ago
  
  7428aace
- give control over tau parameter estimation in AddAAPseudoCounts · cc61afb6
  Studer Gabriel authored 5 years ago
  
  cc61afb6
- allow to adapt parameter defaults in HMMScore · b59448d2
  Studer Gabriel authored 5 years ago
  
  b59448d2
- move null model pseudo counts into separate function · 49d815a3
  Studer Gabriel authored 5 years ago
  
  49d815a3
- add pseudo counts according to Angermueller et al. 2012 · 6bdd21ee
  Studer Gabriel authored 5 years ago
  
  6bdd21ee
- Python export for HMM algorithm · 12692e83
  Studer Gabriel authored 5 years ago
  
  12692e83
- hook up hmm algorithms in build system · b97a8e10
  Studer Gabriel authored 5 years ago
  
  b97a8e10
- algorithm that calculates an HMM-HMM alignment score the hhblits way · 65530e32
  Studer Gabriel authored 5 years ago
  
  65530e32
- Algorithms to add pseudo counts to ProfileHandle objects which contain HMM information · 910df3ae
  Studer Gabriel authored 5 years ago
  
  910df3ae
- add support for hmm related data in ProfileHandle · 71f1450d
  Studer Gabriel authored 5 years ago
  71f1450d
Mar 16, 2020
- make blosum data reproducible · b54d2d09
  Studer Gabriel authored 5 years ago
  b54d2d09
Feb 18, 2020
- Documentation for HMM functionality · 1ccd8359
  Studer Gabriel authored 5 years ago
  
  1ccd8359
Feb 14, 2020
- allow to adapt parameter defaults when adding transition pseudo counts · 9a4bf7c8
  Studer Gabriel authored 5 years ago
  
  9a4bf7c8
Feb 13, 2020
- give control over tau parameter estimation in AddAAPseudoCounts · dadd5fe0
  Studer Gabriel authored 5 years ago
  
  dadd5fe0
- Bum copyright to 2020 · aea78e77
  Bienchen authored 5 years ago
  
  aea78e77
- allow to adapt parameter defaults in HMMScore · c1671359
  Studer Gabriel authored 5 years ago
  
  c1671359
Feb 12, 2020
- move null model pseudo counts into separate function · d1015371
  Studer Gabriel authored 5 years ago
  
  d1015371
- add pseudo counts according to Angermueller et al. 2012 · a4246ece
  Studer Gabriel authored 5 years ago
  
  a4246ece
Feb 06, 2020
- Python export for HMM algorithm · 538d9924
  Studer Gabriel authored 5 years ago
  
  538d9924
- hook up hmm algorithms in build system · 58f5d157
  Studer Gabriel authored 5 years ago
  
  58f5d157
- algorithm that calculates an HMM-HMM alignment score the hhblits way · 67b3374a
  Studer Gabriel authored 5 years ago
  
  67b3374a
- Algorithms to add pseudo counts to ProfileHandle objects which contain HMM information · 71273e72
  Studer Gabriel authored 5 years ago
  
  71273e72
- add support for hmm related data in ProfileHandle · a01f38e6
  Studer Gabriel authored 5 years ago
  a01f38e6
Dec 09, 2019
- Manual Python 3 port of doc example code · a3d9620b
  Studer Gabriel authored 5 years ago
  
  a3d9620b
Dec 05, 2019
- Tried to clarify AlignToSEQRES behaviour. · 47d9629d
  Gerardo Tauriello authored 5 years ago
  
  47d9629d
Dec 03, 2019
- add unit test for AlignmentFromChainView in seq.alg · 166919ad
  Studer Gabriel authored 5 years ago
  
  166919ad
Nov 15, 2019
- Add __next__ function in iterators we export with boost.python · f8b3f610
  Studer Gabriel authored 5 years ago
  f8b3f610
- Fixed implicit relative import for Python modules in shared object files · b4a37afc
  Studer Gabriel authored 5 years ago
  b4a37afc