documentation for ProModII evaluation

modelling/README.md

@@ -39,6 +39,17 @@ Modelling with ProMod3 and MODELLER
   modeller_models directory:
   `python build_modeller_models.py`
 
+Modelling with ProModII
+-----------------------
+
+- ProModII is considered legacy software and only available on our internal 
+  systems. We provide the resulting models in this repository for further 
+  processing. Only 169 modelling runs successfully produced a result.
+  After setting up the environment (loading ProModII/3.70 and 
+  ProMod3/3.1.1-foss-2018b-Python-3.6.6-OST-2.1.0 modules), the models have 
+  been built by calling:
+  `pm build_promodII_models.py`
+
 
 Evaluation
 ----------
@@ -60,4 +71,6 @@ Evaluation
   `python score_models.py`
 - Plots and some key values based on the score json files are generated with:
   `python do_plots.py`
-
+- For the additional evaluation with ProModII execute:
+  `python do_plots_promodII`
+