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Commit 3bd1f035 authored by Niels Schlusser's avatar Niels Schlusser
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Typesetting corrections README 3

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......@@ -94,7 +94,7 @@ There are a few parameters to specify in the middle of the script:
All these scripts can be run in
1. normal mode (training and testing)
2. with the suffix 'predict' after '''python3 <scriptname>''' for prediction and scatterplot creation, only
2. with the suffix 'predict' after ```python3 <scriptname>``` for prediction and scatterplot creation, only
3. with the suffic 'train' for training, only
### Supplementary scripts
......@@ -104,10 +104,10 @@ For the end-to-end prediction, just the input sequences (UTR and CDS), and, if n
## Installation
Clone the github repository and move to the new folder with
'''
```
git clone https://git.scicore.unibas.ch/zavolan_group/data_analysis/predicting-translation-initiation-efficiency.git
cd predicting-translation-initiation-efficiency
'''
```
Setting up a conda environment for tensorflow is highly non-trivial and hardware-specific, especially if you want GPU acceleration. For installation help, refer to [this site](https://www.geeksforgeeks.org/how-to-install-tensorflow-in-anaconda/) and others.
On top of tensorflow, the conda environment for preprocessing requires some additional packages specified in the requirements.txt file.
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