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Commit 3bd1f035 authored by Niels Schlusser's avatar Niels Schlusser
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Typesetting corrections README 3

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...@@ -94,7 +94,7 @@ There are a few parameters to specify in the middle of the script: ...@@ -94,7 +94,7 @@ There are a few parameters to specify in the middle of the script:
All these scripts can be run in All these scripts can be run in
1. normal mode (training and testing) 1. normal mode (training and testing)
2. with the suffix 'predict' after '''python3 <scriptname>''' for prediction and scatterplot creation, only 2. with the suffix 'predict' after ```python3 <scriptname>``` for prediction and scatterplot creation, only
3. with the suffic 'train' for training, only 3. with the suffic 'train' for training, only
### Supplementary scripts ### Supplementary scripts
...@@ -104,10 +104,10 @@ For the end-to-end prediction, just the input sequences (UTR and CDS), and, if n ...@@ -104,10 +104,10 @@ For the end-to-end prediction, just the input sequences (UTR and CDS), and, if n
## Installation ## Installation
Clone the github repository and move to the new folder with Clone the github repository and move to the new folder with
''' ```
git clone https://git.scicore.unibas.ch/zavolan_group/data_analysis/predicting-translation-initiation-efficiency.git git clone https://git.scicore.unibas.ch/zavolan_group/data_analysis/predicting-translation-initiation-efficiency.git
cd predicting-translation-initiation-efficiency cd predicting-translation-initiation-efficiency
''' ```
Setting up a conda environment for tensorflow is highly non-trivial and hardware-specific, especially if you want GPU acceleration. For installation help, refer to [this site](https://www.geeksforgeeks.org/how-to-install-tensorflow-in-anaconda/) and others. Setting up a conda environment for tensorflow is highly non-trivial and hardware-specific, especially if you want GPU acceleration. For installation help, refer to [this site](https://www.geeksforgeeks.org/how-to-install-tensorflow-in-anaconda/) and others.
On top of tensorflow, the conda environment for preprocessing requires some additional packages specified in the requirements.txt file. On top of tensorflow, the conda environment for preprocessing requires some additional packages specified in the requirements.txt file.
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