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78fc6434

Commit 78fc6434 authored 2 years ago by Iris Mestres Pascual Committed by Alex Kanitz 2 years ago

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refactor: merge prepare, map & quantify workflows

parent 343c6b8b

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1 merge request!20refactor: merge prepare, map & quantify workflows

Changes 14

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.gitlab-ci.yml 0 additions, 18 deletions

.gitlab-ci.yml
test/config.yaml 98 additions, 0 deletions

test/config.yaml
test/config_map.yaml 0 additions, 44 deletions

test/config_map.yaml
test/config_quantify.yaml 0 additions, 23 deletions

test/config_quantify.yaml
test/test_dag.sh 4 additions, 24 deletions

test/test_dag.sh
test/test_rule_graph.sh 4 additions, 24 deletions

test/test_rule_graph.sh
test/test_workflow_local.sh 7 additions, 41 deletions

test/test_workflow_local.sh
test/test_workflow_slurm.sh 6 additions, 66 deletions

test/test_workflow_slurm.sh
workflow/Snakefile 108 additions, 0 deletions

workflow/Snakefile
workflow/config.yaml 106 additions, 0 deletions

workflow/config.yaml
workflow/rules/.gitkeep 0 additions, 0 deletions

workflow/rules/.gitkeep
workflow/rules/map.smk 16 additions, 6 deletions

workflow/rules/map.smk
workflow/rules/prepare.smk 32 additions, 12 deletions

workflow/rules/prepare.smk
workflow/rules/quantify.smk 25 additions, 7 deletions

workflow/rules/quantify.smk

with 406 additions and 265 deletions

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