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Commit f5f1a824 authored by BIOPZ-Börsch Anastasiya's avatar BIOPZ-Börsch Anastasiya
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Correct the singularity argument

parent 5b952dc1
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2 merge requests!3Partially correct the local test and update README,!1WIP: Updated workflow
Pipeline #12959 passed
......@@ -24,7 +24,7 @@ snakemake \
--printshellcmds \
--snakefile="../snakemake/Snakefile" \
--use-singularity \
--singularity-args "--bind ${PWD}/../images" \
--singularity-args "--bind ${PWD}/../" \
--cores=4 \
--rerun-incomplete \
--configfile config.yaml \
......@@ -39,4 +39,4 @@ md5sum --check "expected_output.md5"
# find results/ \
# -type f \
# > expected_output.files;
# md5sum $(cat expected_output.files) > expected_output.md5
\ No newline at end of file
# md5sum $(cat expected_output.files) > expected_output.md5
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