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Commit 4456ea0f authored by Melvin Alappat's avatar Melvin Alappat
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fix: remove unnecessary class

parent ec7f686c
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1 merge request!16Issue_4
...@@ -4,7 +4,7 @@ import logging ...@@ -4,7 +4,7 @@ import logging
import os import os
from pathlib import Path from pathlib import Path
import sys import sys
from src.primingprob.priming_prob import Probability as Pbt # type: ignore from src.primingprob.priming_prob import inter_para, inter_prob # type: ignore
def parse_args(): # Input arguments def parse_args(): # Input arguments
...@@ -50,8 +50,8 @@ def main(): ...@@ -50,8 +50,8 @@ def main():
if os.path.exists(args.input_file) and os.path.exists(args.fasta_file): # pragma: no cover if os.path.exists(args.input_file) and os.path.exists(args.fasta_file): # pragma: no cover
logging.basicConfig(level=logging.INFO, format='%(message)s') logging.basicConfig(level=logging.INFO, format='%(message)s')
logging.info("Starting calculating the priming probabilities...") logging.info("Starting calculating the priming probabilities...")
paradata = Pbt.inter_para(args.input_file) paradata = inter_para(args.input_file)
Pbt.inter_prob(paradata, args.fasta_file, args.output_file) inter_prob(paradata, args.fasta_file, args.output_file)
logging.info("Calculations are done...") logging.info("Calculations are done...")
logging.info(f"Potential Priming Sites are saved in {args.output_file}") logging.info(f"Potential Priming Sites are saved in {args.output_file}")
......
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