feat: nextflow workflow for issue 4

src/RIblast_process2.nf

+#!/usr/bin/env nextflow                                                         
+
+params.transcripts = "$baseDir/Docker-Files/transcript3.fasta"
+params.primers = "$baseDir/Docker-Files/primer.fasta"
+
+log.info """\
+         R I B L A S T      P I P E L I N E    
+         ===================================
+         transcripts: ${params.transcripts}
+         primers    : ${params.primers}
+         """
+         .stripIndent()
+
+process RIblast_interaction {   
+
+        input:
+        path transcript from params.transcripts
+        path primer from params.primers
+          
+        script:                                                                 
+        """                                                                     
+        RIblast db -i $transcript -o /RIblast/test_db
+        RIblast ris -i $primer -o /RIblast/Energies.txt -d /RIblast/test_db
+        """                                                                     
+}