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Created with Raphaël 2.2.017Aug1Apr6Jan543230Dec2824232220181715141187643129Nov2824171082docs: extend READMEmainmainUpdate src/generate_transcripts.nfIssue#3Issue#3Update src/poly_a.pyUpdate src/poly_a.pyUpdate .gitlab-ci.yml fileUpdate .gitlab-ci.ymlUpdate requirements_dev.txtUpdate src/poly_a.pyUpdate requirements_dev.txtMake src/poly_a.py runnable, added fasta processing. Initial transcript generation workflow.refactor: outputs to file in ./plots, updated cli and testsissue14_PRCissue14_PRCadditional check in pytestIssue_4Issue_4Final Version 1mastermasteradd test for cli - but needs to be improvedissue_7issue_7fix: remove unnecessary classfix: remove unnecessary classadjusted test filefix reference to packageremove old read_sequencing.pyfix flake8 problemfix mypy problemsfix flake8 problemsMerge branch 'issue_7' of ssh://git.scicore.unibas.ch:2222/zavolan_group/pipelines/scrna-seq-simulation into issue_7add subpackage with clireplace readline() to use file handle as iteratoralphatbetize packagesremoved author namefeat:logging addedupdated workflowfeat: execution of python script in workflowadd: bin folder for nextflowadd nextflow.configchanging directoryadd: Nextflow processdeleting old nextflow processadd: potential input filesadd: __init__.py fileIssue#5:First full project commitCIissue_19issue_19Delete transcriptome.fa