Skip to content
Snippets Groups Projects
.gitlab-ci.yml 560 B
Newer Older
image: snakemake/snakemake:v5.9.1

  - apt install -y unzip bedtools
Alex Kanitz's avatar
Alex Kanitz committed
  - pip install -r scripts/requirements.txt
test:
  script:
Alex Kanitz's avatar
Alex Kanitz committed
    # add code quality tests here
    # add unit tests here
    # add script tests here
Alex Kanitz's avatar
Alex Kanitz committed
    - bash tests/test_scripts_labkey_to_snakemake_table/test.sh
    - bash tests/test_scripts_labkey_to_snakemake_api/test.sh
Alex Kanitz's avatar
Alex Kanitz committed
    # add integration tests here
    - bash tests/test_create_dag_image/test.sh
    - bash tests/test_create_rule_graph/test.sh
Alex Kanitz's avatar
Alex Kanitz committed
    - bash tests/test_integration_workflow/test.local.sh