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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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<!-- Generated by graphviz version 2.40.1 (20161225.0304)
 -->
<!-- Title: snakemake_dag Pages: 1 -->
<svg width="1626pt" height="414pt"
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<!-- Generated by graphviz version 2.42.3 (20191010.1750)
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<!-- Title: snakemake_dag Pages: 1 -->
<svg width="1465pt" height="409pt"
 viewBox="0.00 0.00 1464.50 409.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
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<title>snakemake_dag</title>
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<!-- 0 -->
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<title>0</title>
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</g>
<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<text text-anchor="middle" x="146" y="-93" font-family="sans" font-size="10.00" fill="#000000">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-82" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
=======
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<text text-anchor="middle" x="162.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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</g>
<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
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=======
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</g>
<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="462" y="-93" font-family="sans" font-size="10.00" fill="#000000">fastqc</text>
<text text-anchor="middle" x="462" y="-82" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
=======
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
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</g>
<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
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=======
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</g>
<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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=======
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</g>
<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="910" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_genes</text>
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<!-- 3&#45;&gt;9 -->
<g id="edge23" class="edge">
<title>3&#45;&gt;9</title>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="766" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">salmon_quantmerge_tr</text>
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<!-- 3&#45;&gt;10 -->
<g id="edge25" class="edge">
<title>3&#45;&gt;10</title>
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=======
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</g>
<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<path fill="none" stroke="#569ad8" stroke-width="2" d="M953.5,-180C953.5,-180 866.5,-180 866.5,-180 860.5,-180 854.5,-174 854.5,-168 854.5,-168 854.5,-156 854.5,-156 854.5,-150 860.5,-144 866.5,-144 866.5,-144 953.5,-144 953.5,-144 959.5,-144 965.5,-150 965.5,-156 965.5,-156 965.5,-168 965.5,-168 965.5,-174 959.5,-180 953.5,-180"/>
<text text-anchor="middle" x="910" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">quantification_salmon</text>
=======
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>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
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</g>
<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 4&#45;&gt;9 -->
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<title>4&#45;&gt;9</title>
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<title>4&#45;&gt;10</title>
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=======
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</g>
<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="642" y="-234" font-family="sans" font-size="10.00" fill="#000000">pe_genome_quantification_kallisto</text>
=======
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<title>5&#45;&gt;0</title>
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=======
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</g>
<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<<<<<<< HEAD
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<text text-anchor="middle" x="1044" y="-234" font-family="sans" font-size="10.00" fill="#000000">genome_quantification_kallisto</text>
=======
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>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
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=======
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<title>7</title>
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<text text-anchor="middle" x="1167" y="-93" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<text text-anchor="middle" x="1167" y="-82" font-family="sans" font-size="10.00" fill="#000000">seqmode: paired_end</text>
=======
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<text text-anchor="middle" x="957.5" y="-82" font-family="sans" font-size="10.00">seqmode: paired_end</text>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
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<title>7&#45;&gt;0</title>
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=======
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>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
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<title>8</title>
<<<<<<< HEAD
<path fill="none" stroke="#56d882" stroke-width="2" d="M1397,-108C1397,-108 1309,-108 1309,-108 1303,-108 1297,-102 1297,-96 1297,-96 1297,-84 1297,-84 1297,-78 1303,-72 1309,-72 1309,-72 1397,-72 1397,-72 1403,-72 1409,-78 1409,-84 1409,-84 1409,-96 1409,-96 1409,-102 1403,-108 1397,-108"/>
<text text-anchor="middle" x="1353" y="-93" font-family="sans" font-size="10.00" fill="#000000">calculate_TIN_scores</text>
<text text-anchor="middle" x="1353" y="-82" font-family="sans" font-size="10.00" fill="#000000">seqmode: single_end</text>
=======
<path fill="none" stroke="#56d8c1" stroke-width="2" d="M1210.5,-108C1210.5,-108 1114.5,-108 1114.5,-108 1108.5,-108 1102.5,-102 1102.5,-96 1102.5,-96 1102.5,-84 1102.5,-84 1102.5,-78 1108.5,-72 1114.5,-72 1114.5,-72 1210.5,-72 1210.5,-72 1216.5,-72 1222.5,-78 1222.5,-84 1222.5,-84 1222.5,-96 1222.5,-96 1222.5,-102 1216.5,-108 1210.5,-108"/>
<text text-anchor="middle" x="1162.5" y="-93" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<text text-anchor="middle" x="1162.5" y="-82" font-family="sans" font-size="10.00">seqmode: single_end</text>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<<<<<<< HEAD
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1296.9948,-81.5319C1276.5482,-78.4764 1253.2348,-75.0345 1232,-72 1101.0037,-53.2802 945.3116,-32.3227 875.3277,-22.9708"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="875.6176,-19.4786 865.2424,-21.6242 874.6912,-26.417 875.6176,-19.4786"/>
</g>
<!-- 9&#45;&gt;0 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M891.8314,-71.8314C883.2848,-63.2848 872.9443,-52.9443 863.6198,-43.6198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="865.9592,-41.0095 856.4133,-36.4133 861.0095,-45.9592 865.9592,-41.0095"/>
</g>
<!-- 10&#45;&gt;0 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M784.1686,-71.8314C792.7152,-63.2848 803.0557,-52.9443 812.3802,-43.6198"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="814.9905,-45.9592 819.5867,-36.4133 810.0408,-41.0095 814.9905,-45.9592"/>
=======
<path fill="none" stroke="grey" stroke-width="2" d="M1102.2,-78.37C1019.06,-63.71 871.68,-37.72 802.86,-25.59"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="803.35,-22.12 792.9,-23.83 802.14,-29.01 803.35,-22.12"/>
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#56d8a2" stroke-width="2" d="M755.5,-326.5C755.5,-326.5 627.5,-326.5 627.5,-326.5 621.5,-326.5 615.5,-320.5 615.5,-314.5 615.5,-314.5 615.5,-302.5 615.5,-302.5 615.5,-296.5 621.5,-290.5 627.5,-290.5 627.5,-290.5 755.5,-290.5 755.5,-290.5 761.5,-290.5 767.5,-296.5 767.5,-302.5 767.5,-302.5 767.5,-314.5 767.5,-314.5 767.5,-320.5 761.5,-326.5 755.5,-326.5"/>
<text text-anchor="middle" x="691.5" y="-306" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M645.52,-290.32C617.74,-279.94 582.15,-266.63 552.83,-255.68"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="553.74,-252.28 543.15,-252.06 551.29,-258.84 553.74,-252.28"/>
</g>
<!-- 9&#45;&gt;5 -->
<g id="edge13" class="edge">
<title>9&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M722.78,-290.32C740.95,-280.34 764.02,-267.67 783.49,-256.97"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="785.36,-259.94 792.44,-252.06 781.99,-253.8 785.36,-259.94"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#88d856" stroke-width="2" d="M1237,-252C1237,-252 1136,-252 1136,-252 1130,-252 1124,-246 1124,-240 1124,-240 1124,-228 1124,-228 1124,-222 1130,-216 1136,-216 1136,-216 1237,-216 1237,-216 1243,-216 1249,-222 1249,-228 1249,-228 1249,-240 1249,-240 1249,-246 1243,-252 1237,-252"/>
<text text-anchor="middle" x="1186.5" y="-231.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
</g>
<!-- 9&#45;&gt;18 -->
<g id="edge26" class="edge">
<title>9&#45;&gt;18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M767.61,-291.23C773.99,-290.06 780.35,-288.97 786.5,-288 928.12,-265.74 968.19,-276.39 1113.57,-252.03"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1114.49,-255.42 1123.76,-250.29 1113.32,-248.52 1114.49,-255.42"/>
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M565,-329C565,-329 450,-329 450,-329 444,-329 438,-323 438,-317 438,-317 438,-300 438,-300 438,-294 444,-288 450,-288 450,-288 565,-288 565,-288 571,-288 577,-294 577,-300 577,-300 577,-317 577,-317 577,-323 571,-329 565,-329"/>
<text text-anchor="middle" x="507.5" y="-317" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="507.5" y="-306" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="507.5" y="-295" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 10&#45;&gt;3 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M504.77,-287.69C503.69,-279.91 502.44,-270.84 501.29,-262.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="504.72,-261.75 499.89,-252.32 497.79,-262.7 504.72,-261.75"/>
<g id="edge12" class="edge">
<title>10&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M545.93,-287.88C564.79,-278.25 587.57,-266.62 606.95,-256.72"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="608.56,-259.83 615.88,-252.17 605.38,-253.6 608.56,-259.83"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node12" class="node">
<title>11</title>
<<<<<<< HEAD
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M831,-331.5C831,-331.5 719,-331.5 719,-331.5 713,-331.5 707,-325.5 707,-319.5 707,-319.5 707,-307.5 707,-307.5 707,-301.5 713,-295.5 719,-295.5 719,-295.5 831,-295.5 831,-295.5 837,-295.5 843,-301.5 843,-307.5 843,-307.5 843,-319.5 843,-319.5 843,-325.5 837,-331.5 831,-331.5"/>
<text text-anchor="middle" x="775" y="-311" font-family="sans" font-size="10.00" fill="#000000">pe_remove_polya_cutadapt</text>
</g>
<!-- 11&#45;&gt;3 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M773.9144,-295.2256C772.367,-269.1777 769.5129,-221.1339 767.6881,-190.4171"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="771.1764,-190.1141 767.0895,-180.3393 764.1887,-190.5292 771.1764,-190.1141"/>
</g>
<!-- 11&#45;&gt;5 -->
<g id="edge15" class="edge">
<title>11&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M743.8174,-295.4469C725.4409,-284.8079 701.9954,-271.2342 682.2359,-259.7945"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="683.856,-256.6882 673.4481,-254.7068 680.3487,-262.7462 683.856,-256.6882"/>
</g>
<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#d89c56" stroke-width="2" d="M1238.5,-254.5C1238.5,-254.5 1149.5,-254.5 1149.5,-254.5 1143.5,-254.5 1137.5,-248.5 1137.5,-242.5 1137.5,-242.5 1137.5,-230.5 1137.5,-230.5 1137.5,-224.5 1143.5,-218.5 1149.5,-218.5 1149.5,-218.5 1238.5,-218.5 1238.5,-218.5 1244.5,-218.5 1250.5,-224.5 1250.5,-230.5 1250.5,-230.5 1250.5,-242.5 1250.5,-242.5 1250.5,-248.5 1244.5,-254.5 1238.5,-254.5"/>
<text text-anchor="middle" x="1194" y="-234" font-family="sans" font-size="10.00" fill="#000000">pe_map_genome_star</text>
</g>
<!-- 11&#45;&gt;20 -->
<g id="edge32" class="edge">
<title>11&#45;&gt;20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M843.2317,-305.51C912.5812,-296.7283 1023.1571,-280.9101 1127.8347,-256.8674"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1128.6726,-260.266 1137.6197,-254.5916 1127.0867,-253.448 1128.6726,-260.266"/>
=======
<path fill="none" stroke="#bed856" stroke-width="2" d="M1080.5,-326.5C1080.5,-326.5 970.5,-326.5 970.5,-326.5 964.5,-326.5 958.5,-320.5 958.5,-314.5 958.5,-314.5 958.5,-302.5 958.5,-302.5 958.5,-296.5 964.5,-290.5 970.5,-290.5 970.5,-290.5 1080.5,-290.5 1080.5,-290.5 1086.5,-290.5 1092.5,-296.5 1092.5,-302.5 1092.5,-302.5 1092.5,-314.5 1092.5,-314.5 1092.5,-320.5 1086.5,-326.5 1080.5,-326.5"/>
<text text-anchor="middle" x="1025.5" y="-306" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
</g>
<!-- 11&#45;&gt;4 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M958.46,-291.13C953.41,-290.03 948.38,-288.97 943.5,-288 848.22,-269.01 820.7,-271.51 722.24,-252.27"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="722.65,-248.78 712.16,-250.27 721.29,-255.65 722.65,-248.78"/>
</g>
<!-- 11&#45;&gt;6 -->
<g id="edge15" class="edge">
<title>11&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1024.32,-290.32C1023.74,-281.92 1023.03,-271.62 1022.37,-262.19"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1025.86,-261.79 1021.68,-252.06 1018.87,-262.28 1025.86,-261.79"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#59d856" stroke-width="2" d="M1362,-252C1362,-252 1279,-252 1279,-252 1273,-252 1267,-246 1267,-240 1267,-240 1267,-228 1267,-228 1267,-222 1273,-216 1279,-216 1279,-216 1362,-216 1362,-216 1368,-216 1374,-222 1374,-228 1374,-228 1374,-240 1374,-240 1374,-246 1368,-252 1362,-252"/>
<text text-anchor="middle" x="1320.5" y="-231.5" font-family="sans" font-size="10.00">map_genome_star</text>
</g>
<!-- 11&#45;&gt;19 -->
<g id="edge28" class="edge">
<title>11&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1092.69,-292.13C1136.95,-281.86 1196.4,-267.78 1257.02,-252.34"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1257.94,-255.72 1266.76,-249.85 1256.21,-248.94 1257.94,-255.72"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node13" class="node">
<title>12</title>
<<<<<<< HEAD
<path fill="none" stroke="#d88556" stroke-width="2" d="M900.5,-257C900.5,-257 799.5,-257 799.5,-257 793.5,-257 787.5,-251 787.5,-245 787.5,-245 787.5,-228 787.5,-228 787.5,-222 793.5,-216 799.5,-216 799.5,-216 900.5,-216 900.5,-216 906.5,-216 912.5,-222 912.5,-228 912.5,-228 912.5,-245 912.5,-245 912.5,-251 906.5,-257 900.5,-257"/>
<text text-anchor="middle" x="850" y="-245" font-family="sans" font-size="10.00" fill="#000000">create_index_salmon</text>
<text text-anchor="middle" x="850" y="-234" font-family="sans" font-size="10.00" fill="#000000">kmer: 31</text>
<text text-anchor="middle" x="850" y="-223" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 12&#45;&gt;3 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M826.6013,-215.7476C816.5434,-206.8272 804.7021,-196.3251 794.1676,-186.982"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="796.2217,-184.1255 786.4178,-180.1087 791.5769,-189.3626 796.2217,-184.1255"/>
</g>
<!-- 12&#45;&gt;4 -->
<g id="edge14" class="edge">
<title>12&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M866.7133,-215.7476C873.6158,-207.177 881.6942,-197.1463 888.9908,-188.0864"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="891.8693,-190.0923 895.4158,-180.1087 886.4175,-185.7016 891.8693,-190.0923"/>
=======
<path fill="none" stroke="#d6d856" stroke-width="2" d="M923,-326.5C923,-326.5 808,-326.5 808,-326.5 802,-326.5 796,-320.5 796,-314.5 796,-314.5 796,-302.5 796,-302.5 796,-296.5 802,-290.5 808,-290.5 808,-290.5 923,-290.5 923,-290.5 929,-290.5 935,-296.5 935,-302.5 935,-302.5 935,-314.5 935,-314.5 935,-320.5 929,-326.5 923,-326.5"/>
<text text-anchor="middle" x="865.5" y="-311.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="865.5" y="-300.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge14" class="edge">
<title>12&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M855.55,-290.32C850.47,-281.56 844.2,-270.73 838.55,-260.97"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="841.42,-258.96 833.38,-252.06 835.37,-262.47 841.42,-258.96"/>
<g id="edge16" class="edge">
<title>12&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M902.23,-290.32C923.95,-280.16 951.64,-267.21 974.76,-256.39"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="976.46,-259.47 984.03,-252.06 973.49,-253.12 976.46,-259.47"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node14" class="node">
<title>13</title>
<<<<<<< HEAD
<path fill="none" stroke="#56d86b" stroke-width="2" d="M1096,-331.5C1096,-331.5 1000,-331.5 1000,-331.5 994,-331.5 988,-325.5 988,-319.5 988,-319.5 988,-307.5 988,-307.5 988,-301.5 994,-295.5 1000,-295.5 1000,-295.5 1096,-295.5 1096,-295.5 1102,-295.5 1108,-301.5 1108,-307.5 1108,-307.5 1108,-319.5 1108,-319.5 1108,-325.5 1102,-331.5 1096,-331.5"/>
<text text-anchor="middle" x="1048" y="-311" font-family="sans" font-size="10.00" fill="#000000">remove_polya_cutadapt</text>
</g>
<!-- 13&#45;&gt;4 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1011.0415,-295.4627C993.9738,-285.8012 974.3586,-272.6543 960,-257 941.9194,-237.2879 928.397,-209.8206 920.0045,-189.4885"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="923.2393,-188.151 916.2991,-180.1457 916.7323,-190.7317 923.2393,-188.151"/>
</g>
<!-- 13&#45;&gt;6 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1047.0521,-295.2521C1046.5788,-286.1422 1045.9957,-274.9174 1045.4664,-264.7282"/>
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</g>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1353.5,-254.5C1353.5,-254.5 1280.5,-254.5 1280.5,-254.5 1274.5,-254.5 1268.5,-248.5 1268.5,-242.5 1268.5,-242.5 1268.5,-230.5 1268.5,-230.5 1268.5,-224.5 1274.5,-218.5 1280.5,-218.5 1280.5,-218.5 1353.5,-218.5 1353.5,-218.5 1359.5,-218.5 1365.5,-224.5 1365.5,-230.5 1365.5,-230.5 1365.5,-242.5 1365.5,-242.5 1365.5,-248.5 1359.5,-254.5 1353.5,-254.5"/>
<text text-anchor="middle" x="1317" y="-234" font-family="sans" font-size="10.00" fill="#000000">map_genome_star</text>
</g>
<!-- 13&#45;&gt;21 -->
<g id="edge34" class="edge">
<title>13&#45;&gt;21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1108.243,-298.8927C1148.5556,-288.7854 1202.9425,-274.5127 1258.6038,-257.3403"/>
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=======
<path fill="none" stroke="#70d856" stroke-width="2" d="M1052,-180C1052,-180 863,-180 863,-180 857,-180 851,-174 851,-168 851,-168 851,-156 851,-156 851,-150 857,-144 863,-144 863,-144 1052,-144 1052,-144 1058,-144 1064,-150 1064,-156 1064,-156 1064,-168 1064,-168 1064,-174 1058,-180 1052,-180"/>
<text text-anchor="middle" x="957.5" y="-159.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
</g>
<!-- 13&#45;&gt;7 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M957.5,-143.7C957.5,-135.98 957.5,-126.71 957.5,-118.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="961,-118.1 957.5,-108.1 954,-118.1 961,-118.1"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node15" class="node">
<title>14</title>
<<<<<<< HEAD
<path fill="none" stroke="#59d856" stroke-width="2" d="M676.5,-331.5C676.5,-331.5 575.5,-331.5 575.5,-331.5 569.5,-331.5 563.5,-325.5 563.5,-319.5 563.5,-319.5 563.5,-307.5 563.5,-307.5 563.5,-301.5 569.5,-295.5 575.5,-295.5 575.5,-295.5 676.5,-295.5 676.5,-295.5 682.5,-295.5 688.5,-301.5 688.5,-307.5 688.5,-307.5 688.5,-319.5 688.5,-319.5 688.5,-325.5 682.5,-331.5 676.5,-331.5"/>
<text text-anchor="middle" x="626" y="-316.5" font-family="sans" font-size="10.00" fill="#000000">create_index_kallisto</text>
<text text-anchor="middle" x="626" y="-305.5" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 14&#45;&gt;5 -->
<g id="edge16" class="edge">
<title>14&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M629.7918,-295.2521C631.6847,-286.1422 634.0172,-274.9174 636.1344,-264.7282"/>
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<!-- 14&#45;&gt;6 -->
<g id="edge18" class="edge">
<title>14&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M687.5424,-295.4609C691.0701,-294.5881 694.5742,-293.7602 698,-293 796.4385,-271.156 822.5021,-273.3546 922,-257 933.9567,-255.0347 946.5687,-252.9399 958.9664,-250.8683"/>
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=======
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M1230.5,-180C1230.5,-180 1094.5,-180 1094.5,-180 1088.5,-180 1082.5,-174 1082.5,-168 1082.5,-168 1082.5,-156 1082.5,-156 1082.5,-150 1088.5,-144 1094.5,-144 1094.5,-144 1230.5,-144 1230.5,-144 1236.5,-144 1242.5,-150 1242.5,-156 1242.5,-156 1242.5,-168 1242.5,-168 1242.5,-174 1236.5,-180 1230.5,-180"/>
<text text-anchor="middle" x="1162.5" y="-159.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
<g id="edge18" class="edge">
<title>14&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1112.61,-143.97C1083.85,-134.14 1047.49,-121.73 1017.21,-111.39"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1018.2,-108.03 1007.61,-108.11 1015.94,-114.65 1018.2,-108.03"/>
<g id="edge20" class="edge">
<title>14&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1162.5,-143.7C1162.5,-135.98 1162.5,-126.71 1162.5,-118.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1166,-118.1 1162.5,-108.1 1159,-118.1 1166,-118.1"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node16" class="node">
<title>15</title>
<<<<<<< HEAD
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1250,-180C1250,-180 1084,-180 1084,-180 1078,-180 1072,-174 1072,-168 1072,-168 1072,-156 1072,-156 1072,-150 1078,-144 1084,-144 1084,-144 1250,-144 1250,-144 1256,-144 1262,-150 1262,-156 1262,-156 1262,-168 1262,-168 1262,-174 1256,-180 1250,-180"/>
<text text-anchor="middle" x="1167" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">pe_index_genomic_alignment_samtools</text>
</g>
<!-- 15&#45;&gt;7 -->
<g id="edge19" class="edge">
<title>15&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1167,-143.8314C1167,-136.131 1167,-126.9743 1167,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1170.5001,-118.4132 1167,-108.4133 1163.5001,-118.4133 1170.5001,-118.4132"/>
=======
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1444.5,-180C1444.5,-180 1272.5,-180 1272.5,-180 1266.5,-180 1260.5,-174 1260.5,-168 1260.5,-168 1260.5,-156 1260.5,-156 1260.5,-150 1266.5,-144 1272.5,-144 1272.5,-144 1444.5,-144 1444.5,-144 1450.5,-144 1456.5,-150 1456.5,-156 1456.5,-156 1456.5,-168 1456.5,-168 1456.5,-174 1450.5,-180 1444.5,-180"/>
<text text-anchor="middle" x="1358.5" y="-159.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
</g>
<!-- 15&#45;&gt;8 -->
<g id="edge19" class="edge">
<title>15&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1310.8,-143.97C1283.42,-134.19 1248.84,-121.84 1219.97,-111.52"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1221,-108.18 1210.41,-108.11 1218.65,-114.77 1221,-108.18"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node17" class="node">
<title>16</title>
<<<<<<< HEAD
<path fill="none" stroke="#56c9d8" stroke-width="2" d="M1413.5,-180C1413.5,-180 1292.5,-180 1292.5,-180 1286.5,-180 1280.5,-174 1280.5,-168 1280.5,-168 1280.5,-156 1280.5,-156 1280.5,-150 1286.5,-144 1292.5,-144 1292.5,-144 1413.5,-144 1413.5,-144 1419.5,-144 1425.5,-150 1425.5,-156 1425.5,-156 1425.5,-168 1425.5,-168 1425.5,-174 1419.5,-180 1413.5,-180"/>
<text text-anchor="middle" x="1353" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">extract_transcripts_as_bed12</text>
</g>
<!-- 16&#45;&gt;7 -->
<g id="edge20" class="edge">
<title>16&#45;&gt;7</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1306.0643,-143.8314C1280.8563,-134.0734 1249.6074,-121.977 1223.1209,-111.7242"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1224.1873,-108.384 1213.5981,-108.038 1221.6603,-114.912 1224.1873,-108.384"/>
</g>
<!-- 16&#45;&gt;8 -->
<g id="edge22" class="edge">
<title>16&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1353,-143.8314C1353,-136.131 1353,-126.9743 1353,-118.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1356.5001,-118.4132 1353,-108.4133 1349.5001,-118.4133 1356.5001,-118.4132"/>
=======
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<text text-anchor="middle" x="684.5" y="-386" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="684.5" y="-375" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 16&#45;&gt;9 -->
<g id="edge21" class="edge">
<title>16&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M686.16,-364.82C686.97,-356.42 687.96,-346.12 688.88,-336.69"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="692.38,-336.85 689.85,-326.56 685.41,-336.18 692.38,-336.85"/>
>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
<g id="node18" class="node">
<title>17</title>
<<<<<<< HEAD
<path fill="none" stroke="#56d8b1" stroke-width="2" d="M1606,-180C1606,-180 1456,-180 1456,-180 1450,-180 1444,-174 1444,-168 1444,-168 1444,-156 1444,-156 1444,-150 1450,-144 1456,-144 1456,-144 1606,-144 1606,-144 1612,-144 1618,-150 1618,-156 1618,-156 1618,-168 1618,-168 1618,-174 1612,-180 1606,-180"/>
<text text-anchor="middle" x="1531" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">index_genomic_alignment_samtools</text>
</g>
<!-- 17&#45;&gt;8 -->
<g id="edge21" class="edge">
<title>17&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1486.0831,-143.8314C1462.065,-134.1162 1432.3166,-122.0831 1407.0408,-111.8592"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1408.1767,-108.5432 1397.5939,-108.038 1405.5518,-115.0325 1408.1767,-108.5432"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M887,-406C887,-406 619,-406 619,-406 613,-406 607,-400 607,-394 607,-394 607,-382 607,-382 607,-376 613,-370 619,-370 619,-370 887,-370 887,-370 893,-370 899,-376 899,-382 899,-382 899,-394 899,-394 899,-400 893,-406 887,-406"/>
<text text-anchor="middle" x="753" y="-391" font-family="sans" font-size="10.00" fill="#000000">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="753" y="-380" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 18&#45;&gt;11 -->
<g id="edge27" class="edge">
<title>18&#45;&gt;11</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M758.3256,-369.9656C760.8471,-361.427 763.9163,-351.0333 766.731,-341.502"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="770.1717,-342.2084 769.6472,-331.6265 763.4583,-340.2258 770.1717,-342.2084"/>
</g>
<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1209,-406C1209,-406 929,-406 929,-406 923,-406 917,-400 917,-394 917,-394 917,-382 917,-382 917,-376 923,-370 929,-370 929,-370 1209,-370 1209,-370 1215,-370 1221,-376 1221,-382 1221,-382 1221,-394 1221,-394 1221,-400 1215,-406 1209,-406"/>
<text text-anchor="middle" x="1069" y="-391" font-family="sans" font-size="10.00" fill="#000000">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1069" y="-380" font-family="sans" font-size="10.00" fill="#000000">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
</g>
<!-- 19&#45;&gt;13 -->
<g id="edge28" class="edge">
<title>19&#45;&gt;13</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1063.9165,-369.9656C1061.5096,-361.427 1058.5798,-351.0333 1055.8932,-341.502"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1059.1914,-340.3018 1053.1095,-331.6265 1052.4539,-342.201 1059.1914,-340.3018"/>
</g>
<!-- 20&#45;&gt;15 -->
<g id="edge29" class="edge">
<title>20&#45;&gt;15</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1187.4641,-218.4656C1184.3366,-209.8361 1180.5224,-199.3119 1177.0382,-189.6981"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1180.2673,-188.3356 1173.5693,-180.1265 1173.6861,-190.7207 1180.2673,-188.3356"/>
</g>
<!-- 21&#45;&gt;17 -->
<g id="edge30" class="edge">
<title>21&#45;&gt;17</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1365.5599,-219.5948C1396.4256,-208.8495 1436.6502,-194.8461 1469.7072,-183.3379"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1470.9779,-186.6017 1479.2712,-180.0084 1468.6764,-179.9908 1470.9779,-186.6017"/>
</g>
<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
<path fill="none" stroke="#56d89a" stroke-width="2" d="M1305.5,-334C1305.5,-334 1204.5,-334 1204.5,-334 1198.5,-334 1192.5,-328 1192.5,-322 1192.5,-322 1192.5,-305 1192.5,-305 1192.5,-299 1198.5,-293 1204.5,-293 1204.5,-293 1305.5,-293 1305.5,-293 1311.5,-293 1317.5,-299 1317.5,-305 1317.5,-305 1317.5,-322 1317.5,-322 1317.5,-328 1311.5,-334 1305.5,-334"/>
<text text-anchor="middle" x="1255" y="-322" font-family="sans" font-size="10.00" fill="#000000">create_index_star</text>
<text text-anchor="middle" x="1255" y="-311" font-family="sans" font-size="10.00" fill="#000000">index_size: 75</text>
<text text-anchor="middle" x="1255" y="-300" font-family="sans" font-size="10.00" fill="#000000">organism: homo_sapiens</text>
</g>
<!-- 22&#45;&gt;20 -->
<g id="edge31" class="edge">
<title>22&#45;&gt;20</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1238.6531,-292.8654C1231.2641,-283.5383 1222.4511,-272.4136 1214.6144,-262.5214"/>
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</g>
<!-- 22&#45;&gt;21 -->
<g id="edge33" class="edge">
<title>22&#45;&gt;21</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1271.6149,-292.8654C1279.125,-283.5383 1288.0825,-272.4136 1296.0477,-262.5214"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1298.906,-264.5523 1302.4515,-254.5683 1293.4538,-260.1621 1298.906,-264.5523"/>
=======
<path fill="none" stroke="#a7d856" stroke-width="2" d="M1190,-401C1190,-401 877,-401 877,-401 871,-401 865,-395 865,-389 865,-389 865,-377 865,-377 865,-371 871,-365 877,-365 877,-365 1190,-365 1190,-365 1196,-365 1202,-371 1202,-377 1202,-377 1202,-389 1202,-389 1202,-395 1196,-401 1190,-401"/>
<text text-anchor="middle" x="1033.5" y="-386" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1033.5" y="-375" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 17&#45;&gt;11 -->
<g id="edge22" class="edge">
<title>17&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1031.6,-364.82C1030.68,-356.42 1029.54,-346.12 1028.5,-336.69"/>
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<!-- 18&#45;&gt;13 -->
<g id="edge23" class="edge">
<title>18&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1130.77,-215.97C1098.36,-206.06 1057.32,-193.51 1023.32,-183.12"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1024.06,-179.69 1013.48,-180.11 1022.02,-186.38 1024.06,-179.69"/>
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<!-- 19&#45;&gt;15 -->
<g id="edge24" class="edge">
<title>19&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1329.89,-215.7C1334.26,-207.64 1339.56,-197.89 1344.4,-188.98"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1347.52,-190.56 1349.21,-180.1 1341.37,-187.22 1347.52,-190.56"/>
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<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1311,-329C1311,-329 1196,-329 1196,-329 1190,-329 1184,-323 1184,-317 1184,-317 1184,-300 1184,-300 1184,-294 1190,-288 1196,-288 1196,-288 1311,-288 1311,-288 1317,-288 1323,-294 1323,-300 1323,-300 1323,-317 1323,-317 1323,-323 1317,-329 1311,-329"/>
<text text-anchor="middle" x="1253.5" y="-317" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1253.5" y="-306" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1253.5" y="-295" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 20&#45;&gt;18 -->
<g id="edge25" class="edge">
<title>20&#45;&gt;18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1235.19,-287.69C1227.2,-279.04 1217.75,-268.81 1209.3,-259.68"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1211.86,-257.29 1202.51,-252.32 1206.72,-262.04 1211.86,-257.29"/>
</g>
<!-- 20&#45;&gt;19 -->
<g id="edge27" class="edge">
<title>20&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1271.81,-287.69C1279.8,-279.04 1289.25,-268.81 1297.7,-259.68"/>
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>>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68
Alex Kanitz's avatar
Alex Kanitz committed
</g>
</g>
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