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<!-- 1 -->
<g id="node2" class="node"><title>1</title>
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<text text-anchor="middle" x="29.5" y="-87.5" font-family="sans" font-size="10.00">pe_fastqc</text>
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<!-- 1&#45;&gt;0 -->
<g id="edge9" class="edge"><title>1&#45;&gt;0</title>
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<g id="node3" class="node"><title>2</title>
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<text text-anchor="middle" x="104.5" y="-87.5" font-family="sans" font-size="10.00">fastqc</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge1" class="edge"><title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node"><title>3</title>
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<text text-anchor="middle" x="341.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge"><title>3&#45;&gt;0</title>
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<!-- 8 -->
<g id="node9" class="node"><title>8</title>
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<text text-anchor="middle" x="505.5" y="-87.5" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
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<!-- 3&#45;&gt;8 -->
<g id="edge22" class="edge"><title>3&#45;&gt;8</title>
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<!-- 9 -->
<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="341.5" y="-87.5" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
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<!-- 3&#45;&gt;9 -->
<g id="edge24" class="edge"><title>3&#45;&gt;9</title>
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<!-- 4 -->
<g id="node5" class="node"><title>4</title>
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<text text-anchor="middle" x="478.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge8" class="edge"><title>4&#45;&gt;0</title>
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<!-- 4&#45;&gt;8 -->
<g id="edge21" class="edge"><title>4&#45;&gt;8</title>
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<!-- 4&#45;&gt;9 -->
<g id="edge23" class="edge"><title>4&#45;&gt;9</title>
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<!-- 5 -->
<g id="node6" class="node"><title>5</title>
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<text text-anchor="middle" x="89.5" y="-231.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge"><title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node"><title>6</title>
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<text text-anchor="middle" x="265.5" y="-231.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge"><title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node"><title>7</title>
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<text text-anchor="middle" x="759.5" y="-87.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge4" class="edge"><title>7&#45;&gt;0</title>
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<!-- 8&#45;&gt;0 -->
<g id="edge7" class="edge"><title>8&#45;&gt;0</title>
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<!-- 9&#45;&gt;0 -->
<g id="edge2" class="edge"><title>9&#45;&gt;0</title>
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<!-- 10 -->
<g id="node11" class="node"><title>10</title>
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<text text-anchor="middle" x="368.5" y="-303.5" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 10&#45;&gt;3 -->
<g id="edge11" class="edge"><title>10&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M365.243,-287.871C360.642,-263.67 352.188,-219.211 346.709,-190.393"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="350.075,-189.359 344.768,-180.189 343.198,-190.667 350.075,-189.359"/>
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<!-- 10&#45;&gt;5 -->
<g id="edge14" class="edge"><title>10&#45;&gt;5</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="168.25,-251.15 157.699,-252.111 166.546,-257.939 168.25,-251.15"/>
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<g id="node20" class="node"><title>19</title>
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<text text-anchor="middle" x="647.5" y="-231.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 10&#45;&gt;19 -->
<g id="edge29" class="edge"><title>10&#45;&gt;19</title>
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<!-- 11 -->
<g id="node12" class="node"><title>11</title>
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<text text-anchor="middle" x="451.5" y="-231.5" font-family="sans" font-size="10.00">create_index_salmon</text>
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<!-- 11&#45;&gt;3 -->
<g id="edge10" class="edge"><title>11&#45;&gt;3</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="378.828,-182.606 368.512,-180.19 375.07,-188.511 378.828,-182.606"/>
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<!-- 11&#45;&gt;4 -->
<g id="edge12" class="edge"><title>11&#45;&gt;4</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="471.569,-190.694 471.903,-180.104 465.038,-188.175 471.569,-190.694"/>
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<!-- 12 -->
<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="534.5" y="-303.5" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
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<!-- 12&#45;&gt;4 -->
<g id="edge13" class="edge"><title>12&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M532.903,-287.986C530.719,-269.607 525.826,-239.765 515.5,-216 511.318,-206.375 505.254,-196.71 499.241,-188.318"/>
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<!-- 12&#45;&gt;6 -->
<g id="edge16" class="edge"><title>12&#45;&gt;6</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="341.56,-251.176 331,-252.045 339.797,-257.95 341.56,-251.176"/>
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<!-- 20 -->
<g id="node21" class="node"><title>20</title>
<path fill="none" stroke="#56d8b1" stroke-width="2" d="M807,-252C807,-252 734,-252 734,-252 728,-252 722,-246 722,-240 722,-240 722,-228 722,-228 722,-222 728,-216 734,-216 734,-216 807,-216 807,-216 813,-216 819,-222 819,-228 819,-228 819,-240 819,-240 819,-246 813,-252 807,-252"/>
<text text-anchor="middle" x="770.5" y="-231.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 12&#45;&gt;20 -->
<g id="edge31" class="edge"><title>12&#45;&gt;20</title>
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<!-- 13 -->
<g id="node14" class="node"><title>13</title>
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<text text-anchor="middle" x="158.5" y="-303.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
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<!-- 13&#45;&gt;5 -->
<g id="edge15" class="edge"><title>13&#45;&gt;5</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="115.873,-256.769 106.36,-252.104 110.887,-261.683 115.873,-256.769"/>
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<!-- 13&#45;&gt;6 -->
<g id="edge17" class="edge"><title>13&#45;&gt;6</title>
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<!-- 14 -->
<g id="node15" class="node"><title>14</title>
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<text text-anchor="middle" x="647.5" y="-159.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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<!-- 14&#45;&gt;7 -->
<g id="edge20" class="edge"><title>14&#45;&gt;7</title>
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<!-- 15 -->
<g id="node16" class="node"><title>15</title>
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<text text-anchor="middle" x="833.5" y="-159.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
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<!-- 15&#45;&gt;7 -->
<g id="edge18" class="edge"><title>15&#45;&gt;7</title>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
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<text text-anchor="middle" x="1011.5" y="-159.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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<g id="edge19" class="edge"><title>16&#45;&gt;7</title>
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<text text-anchor="middle" x="368.5" y="-375.5" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
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<text text-anchor="middle" x="534.5" y="-375.5" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
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<text text-anchor="middle" x="701.5" y="-303.5" font-family="sans" font-size="10.00">create_index_star</text>
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