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<!-- Title: snakemake_dag Pages: 1 -->
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<text text-anchor="middle" x="1294" y="-15.5" font-family="sans" font-size="10.00">finish</text>
<g id="node2" class="node"><title>1</title>
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<text text-anchor="middle" x="146" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<g id="edge1" class="edge"><title>1->0</title>
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<text text-anchor="middle" x="462" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="462" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<g id="edge2" class="edge"><title>2->0</title>
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<text text-anchor="middle" x="759" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<text text-anchor="middle" x="1210" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
<g id="edge4" class="edge"><title>4->0</title>
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<text text-anchor="middle" x="1430" y="-159.5" font-family="sans" font-size="10.00">plot_TIN_scores</text>
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<!-- 5->0 -->
<g id="edge5" class="edge"><title>5->0</title>
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<text text-anchor="middle" x="1085" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1085" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 6->0 -->
<g id="edge6" class="edge"><title>6->0</title>
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<!-- 7 -->
<g id="node8" class="node"><title>7</title>
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<text text-anchor="middle" x="1244" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 7->0 -->
<g id="edge7" class="edge"><title>7->0</title>
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<!-- 8 -->
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<text text-anchor="middle" x="748" y="-93" font-family="sans" font-size="10.00">salmon_quantmerge_transcripts</text>
<text text-anchor="middle" x="748" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
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<!-- 8->0 -->
<g id="edge8" class="edge"><title>8->0</title>
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<!-- 9 -->
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<text text-anchor="middle" x="921" y="-82" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
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<!-- 9->0 -->
<g id="edge9" class="edge"><title>9->0</title>
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<!-- 10 -->
<g id="node11" class="node"><title>10</title>
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<!-- 10->0 -->
<g id="edge10" class="edge"><title>10->0</title>
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<!-- 25 -->
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<text text-anchor="middle" x="1436" y="-231.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 10->25 -->
<g id="edge53" class="edge"><title>10->25</title>
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<!-- 11 -->
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<text text-anchor="middle" x="1848" y="-303.5" font-family="sans" font-size="10.00">star_rpm</text>
<g id="edge11" class="edge"><title>11->0</title>
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<!-- 27 -->
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<!-- 11->27 -->
<g id="edge55" class="edge"><title>11->27</title>
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<!-- 12 -->
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<text text-anchor="middle" x="1534" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
<g id="edge12" class="edge"><title>12->0</title>
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<!-- 14 -->
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<text text-anchor="middle" x="1540" y="-87.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
<!-- 12->14 -->
<g id="edge36" class="edge"><title>12->14</title>
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<text text-anchor="middle" x="1669" y="-159.5" font-family="sans" font-size="10.00">alfa_qc</text>
<g id="edge13" class="edge"><title>13->0</title>
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<g id="edge37" class="edge"><title>13->14</title>
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<!-- 14->0 -->
<g id="edge14" class="edge"><title>14->0</title>
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<text text-anchor="middle" x="860" y="-522" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<!-- 15->3 -->
<g id="edge15" class="edge"><title>15->3</title>
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<!-- 19 -->
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<text text-anchor="middle" x="924" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
<!-- 15->19 -->
<g id="edge43" class="edge"><title>15->19</title>
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<!-- 21 -->
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<!-- 15->21 -->
<g id="edge48" class="edge"><title>15->21</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="1277.08,-464.433 1286.45,-459.488 1276.05,-457.511 1277.08,-464.433"/>
<g id="node17" class="node"><title>16</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M1112,-252C1112,-252 1028,-252 1028,-252 1022,-252 1016,-246 1016,-240 1016,-240 1016,-228 1016,-228 1016,-222 1022,-216 1028,-216 1028,-216 1112,-216 1112,-216 1118,-216 1124,-222 1124,-228 1124,-228 1124,-240 1124,-240 1124,-246 1118,-252 1112,-252"/>
<text text-anchor="middle" x="1070" y="-231.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<g id="edge16" class="edge"><title>16->3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1015.75,-218.165C1012.79,-217.418 1009.86,-216.692 1007,-216 956.065,-203.694 898.887,-191.375 852.28,-181.715"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="852.7,-178.228 842.199,-179.632 851.284,-185.083 852.7,-178.228"/>
<!-- 16->4 -->
<g id="edge18" class="edge"><title>16->4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1104.25,-215.876C1123.06,-206.469 1146.58,-194.708 1166.67,-184.667"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1168.24,-187.792 1175.62,-180.19 1165.11,-181.531 1168.24,-187.792"/>
<!-- 17 -->
<g id="node18" class="node"><title>17</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1238,-542.5C1238,-542.5 1142,-542.5 1142,-542.5 1136,-542.5 1130,-536.5 1130,-530.5 1130,-530.5 1130,-518.5 1130,-518.5 1130,-512.5 1136,-506.5 1142,-506.5 1142,-506.5 1238,-506.5 1238,-506.5 1244,-506.5 1250,-512.5 1250,-518.5 1250,-518.5 1250,-530.5 1250,-530.5 1250,-536.5 1244,-542.5 1238,-542.5"/>
<text text-anchor="middle" x="1190" y="-522" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<!-- 17->4 -->
<g id="edge17" class="edge"><title>17->4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1190,-506.151C1190,-479.022 1190,-424.909 1190,-379 1190,-379 1190,-379 1190,-305 1190,-264.822 1197.95,-218.869 1203.82,-190.389"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1207.3,-190.887 1205.95,-180.378 1200.45,-189.431 1207.3,-190.887"/>
<!-- 20 -->
<g id="node21" class="node"><title>20</title>
<path fill="none" stroke="#d89c56" stroke-width="2" d="M1104.5,-180C1104.5,-180 1017.5,-180 1017.5,-180 1011.5,-180 1005.5,-174 1005.5,-168 1005.5,-168 1005.5,-156 1005.5,-156 1005.5,-150 1011.5,-144 1017.5,-144 1017.5,-144 1104.5,-144 1104.5,-144 1110.5,-144 1116.5,-150 1116.5,-156 1116.5,-156 1116.5,-168 1116.5,-168 1116.5,-174 1110.5,-180 1104.5,-180"/>
<text text-anchor="middle" x="1061" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
<!-- 17->20 -->
<g id="edge45" class="edge"><title>17->20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1182.31,-506.093C1171.21,-479.328 1152,-426.21 1152,-379 1152,-379 1152,-379 1152,-305 1152,-264.553 1154.94,-249.98 1133,-216 1125.28,-204.038 1113.84,-193.843 1102.35,-185.685"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1104.28,-182.765 1094.02,-180.109 1100.39,-188.581 1104.28,-182.765"/>
<!-- 23 -->
<g id="node24" class="node"><title>23</title>
<path fill="none" stroke="#56c1d8" stroke-width="2" d="M1753.5,-468C1753.5,-468 1680.5,-468 1680.5,-468 1674.5,-468 1668.5,-462 1668.5,-456 1668.5,-456 1668.5,-444 1668.5,-444 1668.5,-438 1674.5,-432 1680.5,-432 1680.5,-432 1753.5,-432 1753.5,-432 1759.5,-432 1765.5,-438 1765.5,-444 1765.5,-444 1765.5,-456 1765.5,-456 1765.5,-462 1759.5,-468 1753.5,-468"/>
<text text-anchor="middle" x="1717" y="-447.5" font-family="sans" font-size="10.00">map_genome_star</text>
<!-- 17->23 -->
<g id="edge51" class="edge"><title>17->23</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1250.2,-515.219C1352.16,-501.192 1557.56,-472.934 1658.42,-459.059"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1659,-462.512 1668.43,-457.682 1658.05,-455.577 1659,-462.512"/>
</g>
<!-- 18 -->
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
<g id="node19" class="node"><title>18</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M1607,-252C1607,-252 1531,-252 1531,-252 1525,-252 1519,-246 1519,-240 1519,-240 1519,-228 1519,-228 1519,-222 1525,-216 1531,-216 1531,-216 1607,-216 1607,-216 1613,-216 1619,-222 1619,-228 1619,-228 1619,-240 1619,-240 1619,-246 1613,-252 1607,-252"/>
<text text-anchor="middle" x="1569" y="-231.5" font-family="sans" font-size="10.00">merge_TIN_scores</text>
</g>
<!-- 18->5 -->
<g id="edge19" class="edge"><title>18->5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1535,-215.876C1516.4,-206.512 1493.17,-194.814 1473.29,-184.803"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1474.64,-181.562 1464.13,-180.19 1471.49,-187.814 1474.64,-181.562"/>
</g>
<!-- 19->6 -->
<g id="edge20" class="edge"><title>19->6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M963.385,-143.876C985.395,-134.307 1013.01,-122.3 1036.36,-112.148"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1037.97,-115.265 1045.74,-108.068 1035.18,-108.846 1037.97,-115.265"/>
</g>
<!-- 19->7 -->
<g id="edge22" class="edge"><title>19->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M987.686,-146.1C990.834,-145.385 993.952,-144.682 997,-144 1051.64,-131.776 1113.21,-118.563 1161.21,-108.387"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1162.19,-111.759 1171.24,-106.264 1160.74,-104.911 1162.19,-111.759"/>
</g>
<!-- 19->8 -->
<g id="edge24" class="edge"><title>19->8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M880.946,-143.876C856.671,-134.222 826.16,-122.087 800.492,-111.878"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="801.5,-108.512 790.915,-108.068 798.913,-115.016 801.5,-108.512"/>
</g>
<!-- 19->9 -->
<g id="edge26" class="edge"><title>19->9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M923.258,-143.697C922.928,-135.983 922.531,-126.712 922.162,-118.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="925.658,-117.945 921.733,-108.104 918.665,-118.245 925.658,-117.945"/>
</g>
<!-- 20->6 -->
<g id="edge21" class="edge"><title>20->6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1066.93,-143.697C1069.61,-135.898 1072.83,-126.509 1075.8,-117.829"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1079.2,-118.699 1079.14,-108.104 1072.58,-116.429 1079.2,-118.699"/>
</g>
<!-- 20->7 -->
<g id="edge23" class="edge"><title>20->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1105.77,-143.876C1131.12,-134.179 1163.01,-121.98 1189.77,-111.743"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1191.29,-114.91 1199.38,-108.068 1188.79,-108.372 1191.29,-114.91"/>
</g>
<!-- 20->8 -->
<g id="edge25" class="edge"><title>20->8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1005.19,-146.001C1002.43,-145.312 999.684,-144.642 997,-144 943.625,-131.239 883.449,-118.389 835.625,-108.537"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="836.114,-105.065 825.615,-106.482 834.706,-111.922 836.114,-105.065"/>
</g>
<!-- 20->9 -->
<g id="edge27" class="edge"><title>20->9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1026.75,-143.876C1007.94,-134.469 984.415,-122.708 964.334,-112.667"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="965.889,-109.531 955.38,-108.19 962.759,-115.792 965.889,-109.531"/>
</g>
<!-- 21->10 -->
<g id="edge28" class="edge"><title>21->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1289.78,-431.963C1273.11,-423.835 1256.58,-412.231 1247,-396 1238.87,-382.221 1238.87,-373.779 1247,-360 1259.61,-338.628 1284.27,-325.279 1305.44,-317.324"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1306.88,-320.53 1315.17,-313.94 1304.58,-313.918 1306.88,-320.53"/>
<g id="node23" class="node"><title>22</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1418,-396C1418,-396 1268,-396 1268,-396 1262,-396 1256,-390 1256,-384 1256,-384 1256,-372 1256,-372 1256,-366 1262,-360 1268,-360 1268,-360 1418,-360 1418,-360 1424,-360 1430,-366 1430,-372 1430,-372 1430,-384 1430,-384 1430,-390 1424,-396 1418,-396"/>
<text text-anchor="middle" x="1343" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1343" y="-370" font-family="sans" font-size="10.00">seqmode: paired_end</text>
<!-- 21->22 -->
<g id="edge49" class="edge"><title>21->22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1343,-431.697C1343,-423.983 1343,-414.712 1343,-406.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1346.5,-406.104 1343,-396.104 1339.5,-406.104 1346.5,-406.104"/>
<!-- 31 -->
<g id="node32" class="node"><title>31</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M1520,-324C1520,-324 1432,-324 1432,-324 1426,-324 1420,-318 1420,-312 1420,-312 1420,-300 1420,-300 1420,-294 1426,-288 1432,-288 1432,-288 1520,-288 1520,-288 1526,-288 1532,-294 1532,-300 1532,-300 1532,-312 1532,-312 1532,-318 1526,-324 1520,-324"/>
<text text-anchor="middle" x="1476" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
</g>
<!-- 21->31 -->
<g id="edge56" class="edge"><title>21->31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1387.92,-431.937C1405.7,-423.364 1425.16,-411.461 1439,-396 1454.73,-378.433 1464.35,-353.241 1469.82,-334.14"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1473.27,-334.805 1472.45,-324.242 1466.5,-333.01 1473.27,-334.805"/>
</g>
<!-- 22->10 -->
<g id="edge29" class="edge"><title>22->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1343,-359.697C1343,-351.983 1343,-342.712 1343,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1346.5,-334.104 1343,-324.104 1339.5,-334.104 1346.5,-334.104"/>
</g>
<!-- 22->31 -->
<g id="edge57" class="edge"><title>22->31</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1375.54,-359.876C1393.25,-350.554 1415.35,-338.919 1434.32,-328.939"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1436.12,-331.944 1443.34,-324.19 1432.86,-325.75 1436.12,-331.944"/>
</g>
<!-- 23->11 -->
<g id="edge30" class="edge"><title>23->11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1765.69,-446.525C1801.26,-441.86 1847.27,-429.261 1871,-396 1884.22,-377.466 1875.57,-351.952 1865.31,-332.991"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1868.29,-331.152 1860.23,-324.269 1862.24,-334.673 1868.29,-331.152"/>
<!-- 24 -->
<g id="node25" class="node"><title>24</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M1850,-396C1850,-396 1700,-396 1700,-396 1694,-396 1688,-390 1688,-384 1688,-384 1688,-372 1688,-372 1688,-366 1694,-360 1700,-360 1700,-360 1850,-360 1850,-360 1856,-360 1862,-366 1862,-372 1862,-372 1862,-384 1862,-384 1862,-390 1856,-396 1850,-396"/>
<text text-anchor="middle" x="1775" y="-381" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1775" y="-370" font-family="sans" font-size="10.00">seqmode: single_end</text>
BIOPZ-Iborra de Toledo Paula
committed
</g>
<!-- 23->24 -->
<g id="edge52" class="edge"><title>23->24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1731.34,-431.697C1738.29,-423.305 1746.77,-413.07 1754.4,-403.861"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1757.14,-406.038 1760.83,-396.104 1751.75,-401.571 1757.14,-406.038"/>
<!-- 32 -->
<g id="node33" class="node"><title>32</title>
<path fill="none" stroke="#b6d856" stroke-width="2" d="M1668,-324C1668,-324 1580,-324 1580,-324 1574,-324 1568,-318 1568,-312 1568,-312 1568,-300 1568,-300 1568,-294 1574,-288 1580,-288 1580,-288 1668,-288 1668,-288 1674,-288 1680,-294 1680,-300 1680,-300 1680,-312 1680,-312 1680,-318 1674,-324 1668,-324"/>
<text text-anchor="middle" x="1624" y="-303.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
</g>
<!-- 23->32 -->
<g id="edge59" class="edge"><title>23->32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1704.03,-431.545C1696.54,-421.31 1687.04,-408.06 1679,-396 1665.11,-375.148 1650.21,-350.925 1639.44,-333.019"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1642.34,-331.061 1634.2,-324.282 1636.34,-334.659 1642.34,-331.061"/>
</g>
<!-- 24->11 -->
<g id="edge31" class="edge"><title>24->11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1793.04,-359.697C1802.06,-351.05 1813.12,-340.449 1822.94,-331.027"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1825.37,-333.552 1830.16,-324.104 1820.52,-328.499 1825.37,-333.552"/>
</g>
<!-- 24->32 -->
<g id="edge60" class="edge"><title>24->32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1738.06,-359.876C1717.51,-350.349 1691.75,-338.407 1669.91,-328.283"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1671.36,-325.099 1660.82,-324.068 1668.42,-331.45 1671.36,-325.099"/>
</g>
<!-- 25->12 -->
<g id="edge32" class="edge"><title>25->12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1459.97,-215.876C1472.55,-206.893 1488.13,-195.763 1501.75,-186.034"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1503.83,-188.85 1509.93,-180.19 1499.76,-183.154 1503.83,-188.85"/>
<!-- 26 -->
<g id="node27" class="node"><title>26</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M1729,-252C1729,-252 1649,-252 1649,-252 1643,-252 1637,-246 1637,-240 1637,-240 1637,-228 1637,-228 1637,-222 1643,-216 1649,-216 1649,-216 1729,-216 1729,-216 1735,-216 1741,-222 1741,-228 1741,-228 1741,-240 1741,-240 1741,-246 1735,-252 1729,-252"/>
<text text-anchor="middle" x="1689" y="-231.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
<!-- 26->12 -->
<g id="edge33" class="edge"><title>26->12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1651.08,-215.876C1626.56,-204.799 1594.8,-190.457 1570.55,-179.504"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1571.87,-176.264 1561.32,-175.338 1568.99,-182.643 1571.87,-176.264"/>
</g>
<!-- 26->13 -->
<g id="edge35" class="edge"><title>26->13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1684.06,-215.697C1681.83,-207.898 1679.15,-198.509 1676.67,-189.829"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1680,-188.758 1673.89,-180.104 1673.27,-190.681 1680,-188.758"/>
<g id="edge34" class="edge"><title>27->13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1786.08,-215.876C1761.56,-204.799 1729.8,-190.457 1705.55,-179.504"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1706.87,-176.264 1696.32,-175.338 1703.99,-182.643 1706.87,-176.264"/>
</g>
<!-- 28 -->
<g id="node29" class="node"><title>28</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M994,-617C994,-617 726,-617 726,-617 720,-617 714,-611 714,-605 714,-605 714,-593 714,-593 714,-587 720,-581 726,-581 726,-581 994,-581 994,-581 1000,-581 1006,-587 1006,-593 1006,-593 1006,-605 1006,-605 1006,-611 1000,-617 994,-617"/>
<text text-anchor="middle" x="860" y="-602" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="860" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
</g>
<!-- 28->15 -->
<g id="edge38" class="edge"><title>28->15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M860,-580.819C860,-572.422 860,-562.116 860,-552.686"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="863.5,-552.558 860,-542.558 856.5,-552.558 863.5,-552.558"/>
<g id="node30" class="node"><title>29</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1056.5,-324C1056.5,-324 955.5,-324 955.5,-324 949.5,-324 943.5,-318 943.5,-312 943.5,-312 943.5,-300 943.5,-300 943.5,-294 949.5,-288 955.5,-288 955.5,-288 1056.5,-288 1056.5,-288 1062.5,-288 1068.5,-294 1068.5,-300 1068.5,-300 1068.5,-312 1068.5,-312 1068.5,-318 1062.5,-324 1056.5,-324"/>
<text text-anchor="middle" x="1006" y="-309" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1006" y="-298" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge39" class="edge"><title>29->16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1021.82,-287.697C1029.57,-279.22 1039.04,-268.864 1047.52,-259.583"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1050.2,-261.846 1054.36,-252.104 1045.03,-257.123 1050.2,-261.846"/>
<!-- 33 -->
<g id="node34" class="node"><title>33</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M985.5,-252C985.5,-252 900.5,-252 900.5,-252 894.5,-252 888.5,-246 888.5,-240 888.5,-240 888.5,-228 888.5,-228 888.5,-222 894.5,-216 900.5,-216 900.5,-216 985.5,-216 985.5,-216 991.5,-216 997.5,-222 997.5,-228 997.5,-228 997.5,-240 997.5,-240 997.5,-246 991.5,-252 985.5,-252"/>
<text text-anchor="middle" x="943" y="-237" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="943" y="-226" font-family="sans" font-size="10.00">kmer: 31</text>
<!-- 29->33 -->
<g id="edge62" class="edge"><title>29->33</title>
<path fill="none" stroke="grey" stroke-width="2" d="M990.427,-287.697C982.798,-279.22 973.477,-268.864 965.124,-259.583"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="967.685,-257.196 958.394,-252.104 962.482,-261.879 967.685,-257.196"/>
<!-- 30 -->
<g id="node31" class="node"><title>30</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M1330,-617C1330,-617 1050,-617 1050,-617 1044,-617 1038,-611 1038,-605 1038,-605 1038,-593 1038,-593 1038,-587 1044,-581 1050,-581 1050,-581 1330,-581 1330,-581 1336,-581 1342,-587 1342,-593 1342,-593 1342,-605 1342,-605 1342,-611 1336,-617 1330,-617"/>
<text text-anchor="middle" x="1190" y="-602" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1190" y="-591" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<!-- 30->17 -->
<g id="edge40" class="edge"><title>30->17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1190,-580.819C1190,-572.422 1190,-562.116 1190,-552.686"/>
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460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
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490
491
492
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494
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498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
<g id="edge41" class="edge"><title>31->18</title>
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<!-- 32->18 -->
<g id="edge42" class="edge"><title>32->18</title>
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<g id="edge44" class="edge"><title>33->19</title>
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<g id="edge46" class="edge"><title>33->20</title>
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<!-- 34 -->
<g id="node35" class="node"><title>34</title>
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<text text-anchor="middle" x="1717" y="-533" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1717" y="-522" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1717" y="-511" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<g id="edge47" class="edge"><title>34->21</title>
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<g id="edge50" class="edge"><title>34->23</title>
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<g id="edge54" class="edge"><title>34->26</title>
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<!-- 35 -->
<g id="node36" class="node"><title>35</title>
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<text text-anchor="middle" x="1559" y="-375.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
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<!-- 35->31 -->
<g id="edge58" class="edge"><title>35->31</title>
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<!-- 35->32 -->
<g id="edge61" class="edge"><title>35->32</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1575.07,-359.697C1582.94,-351.22 1592.56,-340.864 1601.17,-331.583"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1603.88,-333.814 1608.12,-324.104 1598.75,-329.051 1603.88,-333.814"/>