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samples.tsv 1.08 KiB
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Alex Kanitz's avatar
clean up tests
Alex Kanitz committed
1 
sample	fq1	fq2	fq1_3p	fq1_5p	fq2_3p	fq2_5p	fq1_polya	fq2_polya	organism	index_size	multimappers	soft_clip	pass_mode	gtf_filtered	libtype	kallisto_directionality	mean	sd	genome	gtf	tr_fasta_filtered	kmer	seqmode
BIOPZ-Iborra de Toledo Paula's avatar
integrate completed rules into workflow  
BIOPZ-Iborra de Toledo Paula committed
2 3 
HNRNPC_control_rep1	input_files/GSM1502498_1.fastq.gz	input_files/GSM1502498_2.fastq.gz	AGATCGGAAGAGCACA	XXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXX	AAAAAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTTTT	homo_sapiens	100	10	Local	Basic	input_files/Homo_sapiens.GRCh38.99.chr.chrom_22.gtf	A	--fr	250	100	input_files/Homo_sapiens.GRCh38.dna_sm.primary_assembly.chrom_22.fa	input_files/Homo_sapiens.GRCh38.99.chr.chrom_22.gtf	input_files/transcripts_chrom_22.fa	31	single_end
HNRNPC_KD_rep1	input_files/GSM1502500_1.fastq.gz	input_files/GSM1502500_2.fastq.gz	AGATCGGAAGAGCACA	XXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXX	AAAAAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTTTT	homo_sapiens	100	10	Local	Basic	input_files/Homo_sapiens.GRCh38.99.chr.chrom_22.gtf	A	--fr	250	100	input_files/Homo_sapiens.GRCh38.dna_sm.primary_assembly.chrom_22.fa	input_files/Homo_sapiens.GRCh38.99.chr.chrom_22.gtf	input_files/transcripts_chrom_22.fa	31	paired_end