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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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<!-- Generated by graphviz version 2.38.0 (20140413.2041)
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<!-- Title: snakemake_dag Pages: 1 -->
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<title>snakemake_dag</title>
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<!-- 0 -->
<g id="node1" class="node"><title>0</title>
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<text text-anchor="middle" x="683.5" y="-15.5" font-family="sans" font-size="10.00">finish</text>
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</g>
<!-- 1 -->
<g id="node2" class="node"><title>1</title>
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<text text-anchor="middle" x="78.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="78.5" y="-82" font-family="sans" font-size="10.00">sample: HNRNPC_control_rep1</text>
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</g>
<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge"><title>1&#45;&gt;0</title>
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</g>
<!-- 2 -->
<g id="node3" class="node"><title>2</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M305.5,-108C305.5,-108 187.5,-108 187.5,-108 181.5,-108 175.5,-102 175.5,-96 175.5,-96 175.5,-84 175.5,-84 175.5,-78 181.5,-72 187.5,-72 187.5,-72 305.5,-72 305.5,-72 311.5,-72 317.5,-78 317.5,-84 317.5,-84 317.5,-96 317.5,-96 317.5,-102 311.5,-108 305.5,-108"/>
<text text-anchor="middle" x="246.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="246.5" y="-82" font-family="sans" font-size="10.00">sample: HNRNPC_KD_rep1</text>
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</g>
<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge"><title>2&#45;&gt;0</title>
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</g>
<!-- 3 -->
<g id="node4" class="node"><title>3</title>
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<text text-anchor="middle" x="422.5" y="-87.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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</g>
<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge"><title>3&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M486.014,-71.9656C536.337,-58.4691 604.892,-40.0826 646.577,-28.9028"/>
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</g>
<!-- 4 -->
<g id="node5" class="node"><title>4</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M705.5,-108C705.5,-108 539.5,-108 539.5,-108 533.5,-108 527.5,-102 527.5,-96 527.5,-96 527.5,-84 527.5,-84 527.5,-78 533.5,-72 539.5,-72 539.5,-72 705.5,-72 705.5,-72 711.5,-72 717.5,-78 717.5,-84 717.5,-84 717.5,-96 717.5,-96 717.5,-102 711.5,-108 705.5,-108"/>
<text text-anchor="middle" x="622.5" y="-87.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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</g>
<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge"><title>4&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M637.579,-71.6966C644.892,-63.3046 653.81,-53.0705 661.835,-43.8613"/>
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</g>
<!-- 5 -->
<g id="node6" class="node"><title>5</title>
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<text text-anchor="middle" x="667.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
</g>
<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge"><title>5&#45;&gt;0</title>
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</g>
<!-- 6 -->
<g id="node7" class="node"><title>6</title>
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<text text-anchor="middle" x="804.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge"><title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node"><title>7</title>
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<text text-anchor="middle" x="961.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
</g>
<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge"><title>7&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M927.967,-143.871C875.381,-117.011 773.939,-65.1956 719.734,-37.5078"/>
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<!-- 8 -->
<g id="node9" class="node"><title>8</title>
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<text text-anchor="middle" x="1137.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
</g>
<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge"><title>8&#45;&gt;0</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="721.109,-27.0961 710.52,-27.4513 719.02,-33.777 721.109,-27.0961"/>
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<!-- 9 -->
<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="414.5" y="-159.5" font-family="sans" font-size="10.00">map_genome_star</text>
</g>
<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge"><title>9&#45;&gt;3</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="422.887,-118.437 420.545,-108.104 415.932,-117.642 422.887,-118.437"/>
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<!-- 10 -->
<g id="node11" class="node"><title>10</title>
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<text text-anchor="middle" x="537.5" y="-159.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
</g>
<!-- 10&#45;&gt;4 -->
<g id="edge10" class="edge"><title>10&#45;&gt;4</title>
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<!-- 11 -->
<g id="node12" class="node"><title>11</title>
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<text text-anchor="middle" x="609.5" y="-234" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
</g>
<!-- 11&#45;&gt;5 -->
<g id="edge11" class="edge"><title>11&#45;&gt;5</title>
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<!-- 11&#45;&gt;7 -->
<g id="edge15" class="edge"><title>11&#45;&gt;7</title>
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<!-- 11&#45;&gt;9 -->
<g id="edge20" class="edge"><title>11&#45;&gt;9</title>
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<!-- 12 -->
<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="750.5" y="-245" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="750.5" y="-234" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="750.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 12&#45;&gt;5 -->
<g id="edge12" class="edge"><title>12&#45;&gt;5</title>
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<!-- 12&#45;&gt;6 -->
<g id="edge14" class="edge"><title>12&#45;&gt;6</title>
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<!-- 13 -->
<g id="node14" class="node"><title>13</title>
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<text text-anchor="middle" x="899.5" y="-234" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
</g>
<!-- 13&#45;&gt;6 -->
<g id="edge13" class="edge"><title>13&#45;&gt;6</title>
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<!-- 13&#45;&gt;8 -->
<g id="edge17" class="edge"><title>13&#45;&gt;8</title>
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<!-- 13&#45;&gt;10 -->
<g id="edge22" class="edge"><title>13&#45;&gt;10</title>
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<!-- 14 -->
<g id="node15" class="node"><title>14</title>
<path fill="none" stroke="#8fd856" stroke-width="2" d="M1170,-254.5C1170,-254.5 1069,-254.5 1069,-254.5 1063,-254.5 1057,-248.5 1057,-242.5 1057,-242.5 1057,-230.5 1057,-230.5 1057,-224.5 1063,-218.5 1069,-218.5 1069,-218.5 1170,-218.5 1170,-218.5 1176,-218.5 1182,-224.5 1182,-230.5 1182,-230.5 1182,-242.5 1182,-242.5 1182,-248.5 1176,-254.5 1170,-254.5"/>
<text text-anchor="middle" x="1119.5" y="-239.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="1119.5" y="-228.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 14&#45;&gt;7 -->
<g id="edge16" class="edge"><title>14&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1082.06,-218.319C1059.82,-208.116 1031.45,-195.096 1007.81,-184.25"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1009.22,-181.048 998.675,-180.058 1006.3,-187.41 1009.22,-181.048"/>
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<!-- 14&#45;&gt;8 -->
<g id="edge18" class="edge"><title>14&#45;&gt;8</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="1134.25,-190.607 1133.26,-180.058 1127.46,-188.92 1134.25,-190.607"/>
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<!-- 15 -->
<g id="node16" class="node"><title>15</title>
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<text text-anchor="middle" x="432.5" y="-245" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="432.5" y="-234" font-family="sans" font-size="10.00">index_size: 100</text>
<text text-anchor="middle" x="432.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 15&#45;&gt;9 -->
<g id="edge19" class="edge"><title>15&#45;&gt;9</title>
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<!-- 15&#45;&gt;10 -->
<g id="edge21" class="edge"><title>15&#45;&gt;10</title>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
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<text text-anchor="middle" x="609.5" y="-314" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="609.5" y="-303" font-family="sans" font-size="10.00">sample: HNRNPC_control_rep1</text>
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<!-- 16&#45;&gt;11 -->
<g id="edge23" class="edge"><title>16&#45;&gt;11</title>
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<!-- 17 -->
<g id="node18" class="node"><title>17</title>
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<text text-anchor="middle" x="899.5" y="-314" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="899.5" y="-303" font-family="sans" font-size="10.00">sample: HNRNPC_KD_rep1</text>
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<g id="edge24" class="edge"><title>17&#45;&gt;13</title>
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Alex Kanitz's avatar
Alex Kanitz committed
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