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<g id="node1" class="node"><title>0</title>
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<text text-anchor="middle" x="683.5" y="-15.5" font-family="sans" font-size="10.00">finish</text>
<g id="node2" class="node"><title>1</title>
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<text text-anchor="middle" x="78.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="78.5" y="-82" font-family="sans" font-size="10.00">sample: HNRNPC_control_rep1</text>
<g id="edge1" class="edge"><title>1->0</title>
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<g id="node3" class="node"><title>2</title>
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<text text-anchor="middle" x="246.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="246.5" y="-82" font-family="sans" font-size="10.00">sample: HNRNPC_KD_rep1</text>
<g id="edge2" class="edge"><title>2->0</title>
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<g id="node4" class="node"><title>3</title>
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<text text-anchor="middle" x="422.5" y="-87.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<g id="edge3" class="edge"><title>3->0</title>
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<g id="node5" class="node"><title>4</title>
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<text text-anchor="middle" x="622.5" y="-87.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
<g id="edge4" class="edge"><title>4->0</title>
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<g id="node6" class="node"><title>5</title>
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<text text-anchor="middle" x="667.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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<!-- 5->0 -->
<g id="edge5" class="edge"><title>5->0</title>
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<g id="node7" class="node"><title>6</title>
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<text text-anchor="middle" x="804.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 6->0 -->
<g id="edge6" class="edge"><title>6->0</title>
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<!-- 7 -->
<g id="node8" class="node"><title>7</title>
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<text text-anchor="middle" x="961.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 7->0 -->
<g id="edge7" class="edge"><title>7->0</title>
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<!-- 8 -->
<g id="node9" class="node"><title>8</title>
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<text text-anchor="middle" x="1137.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 8->0 -->
<g id="edge8" class="edge"><title>8->0</title>
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<!-- 9 -->
<g id="node10" class="node"><title>9</title>
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<text text-anchor="middle" x="414.5" y="-159.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 9->3 -->
<g id="edge9" class="edge"><title>9->3</title>
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<!-- 10 -->
<g id="node11" class="node"><title>10</title>
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<text text-anchor="middle" x="537.5" y="-159.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 10->4 -->
<g id="edge10" class="edge"><title>10->4</title>
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<!-- 11 -->
<g id="node12" class="node"><title>11</title>
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<text text-anchor="middle" x="609.5" y="-234" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
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<!-- 11->5 -->
<g id="edge11" class="edge"><title>11->5</title>
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<!-- 11->7 -->
<g id="edge15" class="edge"><title>11->7</title>
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<!-- 11->9 -->
<g id="edge20" class="edge"><title>11->9</title>
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<!-- 12 -->
<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="750.5" y="-245" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="750.5" y="-234" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="750.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 12->5 -->
<g id="edge12" class="edge"><title>12->5</title>
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<!-- 12->6 -->
<g id="edge14" class="edge"><title>12->6</title>
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<!-- 13 -->
<g id="node14" class="node"><title>13</title>
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<text text-anchor="middle" x="899.5" y="-234" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 13->6 -->
<g id="edge13" class="edge"><title>13->6</title>
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<!-- 13->8 -->
<g id="edge17" class="edge"><title>13->8</title>
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<!-- 13->10 -->
<g id="edge22" class="edge"><title>13->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M833.639,-218.429C829.878,-217.576 826.145,-216.76 822.5,-216 729.047,-196.523 701.767,-200.061 604.283,-180.054"/>
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<!-- 14 -->
<g id="node15" class="node"><title>14</title>
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<text text-anchor="middle" x="1119.5" y="-239.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="1119.5" y="-228.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
</g>
<!-- 14->7 -->
<g id="edge16" class="edge"><title>14->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1082.06,-218.319C1059.82,-208.116 1031.45,-195.096 1007.81,-184.25"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1009.22,-181.048 998.675,-180.058 1006.3,-187.41 1009.22,-181.048"/>
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<!-- 14->8 -->
<g id="edge18" class="edge"><title>14->8</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="1134.25,-190.607 1133.26,-180.058 1127.46,-188.92 1134.25,-190.607"/>
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<!-- 15 -->
<g id="node16" class="node"><title>15</title>
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<text text-anchor="middle" x="432.5" y="-245" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="432.5" y="-234" font-family="sans" font-size="10.00">index_size: 100</text>
<text text-anchor="middle" x="432.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 15->9 -->
<g id="edge19" class="edge"><title>15->9</title>
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<!-- 15->10 -->
<g id="edge21" class="edge"><title>15->10</title>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
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<text text-anchor="middle" x="609.5" y="-314" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="609.5" y="-303" font-family="sans" font-size="10.00">sample: HNRNPC_control_rep1</text>
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<!-- 16->11 -->
<g id="edge23" class="edge"><title>16->11</title>
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<!-- 17 -->
<g id="node18" class="node"><title>17</title>
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<text text-anchor="middle" x="899.5" y="-314" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="899.5" y="-303" font-family="sans" font-size="10.00">sample: HNRNPC_KD_rep1</text>
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