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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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<!-- Generated by graphviz version 2.42.3 (20191010.1750)
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<!-- Title: snakemake_dag Pages: 1 -->
<svg width="1687pt" height="337pt"
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<title>snakemake_dag</title>
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<!-- 0 -->
<g id="node1" class="node">
<title>0</title>
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<text text-anchor="middle" x="1089.5" y="-15.5" font-family="sans" font-size="10.00">finish</text>
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M313,-108C313,-108 12,-108 12,-108 6,-108 0,-102 0,-96 0,-96 0,-84 0,-84 0,-78 6,-72 12,-72 12,-72 313,-72 313,-72 319,-72 325,-78 325,-84 325,-84 325,-96 325,-96 325,-102 319,-108 313,-108"/>
<text text-anchor="middle" x="162.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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</g>
<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M325.41,-72.69C328.13,-72.46 330.82,-72.23 333.5,-72 609.14,-48.64 941.95,-27.9 1052.1,-21.24"/>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M652.16,-71.97C784.23,-55.97 973.03,-33.11 1052.25,-23.51"/>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M899,-108C899,-108 710,-108 710,-108 704,-108 698,-102 698,-96 698,-96 698,-84 698,-84 698,-78 704,-72 710,-72 710,-72 899,-72 899,-72 905,-72 911,-78 911,-84 911,-84 911,-96 911,-96 911,-102 905,-108 899,-108"/>
<text text-anchor="middle" x="804.5" y="-87.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M873.85,-71.97C930.11,-58.15 1007.22,-39.21 1052.37,-28.12"/>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1112.5,-108C1112.5,-108 940.5,-108 940.5,-108 934.5,-108 928.5,-102 928.5,-96 928.5,-96 928.5,-84 928.5,-84 928.5,-78 934.5,-72 940.5,-72 940.5,-72 1112.5,-72 1112.5,-72 1118.5,-72 1124.5,-78 1124.5,-84 1124.5,-84 1124.5,-96 1124.5,-96 1124.5,-102 1118.5,-108 1112.5,-108"/>
<text text-anchor="middle" x="1026.5" y="-87.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1042.07,-71.7C1049.7,-63.22 1059.02,-52.86 1067.38,-43.58"/>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#56d873" stroke-width="2" d="M1129.5,-180C1129.5,-180 1011.5,-180 1011.5,-180 1005.5,-180 999.5,-174 999.5,-168 999.5,-168 999.5,-156 999.5,-156 999.5,-150 1005.5,-144 1011.5,-144 1011.5,-144 1129.5,-144 1129.5,-144 1135.5,-144 1141.5,-150 1141.5,-156 1141.5,-156 1141.5,-168 1141.5,-168 1141.5,-174 1135.5,-180 1129.5,-180"/>
<text text-anchor="middle" x="1070.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#d87556" stroke-width="2" d="M1273,-180C1273,-180 1172,-180 1172,-180 1166,-180 1160,-174 1160,-168 1160,-168 1160,-156 1160,-156 1160,-150 1166,-144 1172,-144 1172,-144 1273,-144 1273,-144 1279,-144 1285,-150 1285,-156 1285,-156 1285,-168 1285,-168 1285,-174 1279,-180 1273,-180"/>
<text text-anchor="middle" x="1222.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1210.06,-143.86C1196.32,-125.38 1173.14,-95.45 1150.5,-72 1140.64,-61.79 1129.04,-51.36 1118.62,-42.5"/>
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<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#59d856" stroke-width="2" d="M1478,-180C1478,-180 1315,-180 1315,-180 1309,-180 1303,-174 1303,-168 1303,-168 1303,-156 1303,-156 1303,-150 1309,-144 1315,-144 1315,-144 1478,-144 1478,-144 1484,-144 1490,-150 1490,-156 1490,-156 1490,-168 1490,-168 1490,-174 1484,-180 1478,-180"/>
<text text-anchor="middle" x="1396.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1359.47,-143.87C1300.25,-116.48 1184.93,-63.14 1126.03,-35.9"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1127.28,-32.62 1116.74,-31.6 1124.34,-38.97 1127.28,-32.62"/>
<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#56c9d8" stroke-width="2" d="M1666.5,-180C1666.5,-180 1520.5,-180 1520.5,-180 1514.5,-180 1508.5,-174 1508.5,-168 1508.5,-168 1508.5,-156 1508.5,-156 1508.5,-150 1514.5,-144 1520.5,-144 1520.5,-144 1666.5,-144 1666.5,-144 1672.5,-144 1678.5,-150 1678.5,-156 1678.5,-156 1678.5,-168 1678.5,-168 1678.5,-174 1672.5,-180 1666.5,-180"/>
<text text-anchor="middle" x="1593.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1532.96,-143.94C1427.4,-114.2 1212.71,-53.71 1126.53,-29.43"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1127.24,-26 1116.67,-26.65 1125.34,-32.74 1127.24,-26"/>
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M844,-180C844,-180 743,-180 743,-180 737,-180 731,-174 731,-168 731,-168 731,-156 731,-156 731,-150 737,-144 743,-144 743,-144 844,-144 844,-144 850,-144 856,-150 856,-156 856,-156 856,-168 856,-168 856,-174 850,-180 844,-180"/>
<text text-anchor="middle" x="793.5" y="-159.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M796.22,-143.7C797.43,-135.98 798.89,-126.71 800.24,-118.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="803.72,-118.53 801.81,-108.1 796.8,-117.44 803.72,-118.53"/>
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#70d856" stroke-width="2" d="M969,-180C969,-180 886,-180 886,-180 880,-180 874,-174 874,-168 874,-168 874,-156 874,-156 874,-150 880,-144 886,-144 886,-144 969,-144 969,-144 975,-144 981,-150 981,-156 981,-156 981,-168 981,-168 981,-174 975,-180 969,-180"/>
<text text-anchor="middle" x="927.5" y="-159.5" font-family="sans" font-size="10.00">map_genome_star</text>
<g id="edge10" class="edge">
<title>10&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M951.72,-143.88C964.42,-134.89 980.16,-123.76 993.92,-114.03"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="996.04,-116.82 1002.19,-108.19 992,-111.11 996.04,-116.82"/>
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M1096.5,-254.5C1096.5,-254.5 968.5,-254.5 968.5,-254.5 962.5,-254.5 956.5,-248.5 956.5,-242.5 956.5,-242.5 956.5,-230.5 956.5,-230.5 956.5,-224.5 962.5,-218.5 968.5,-218.5 968.5,-218.5 1096.5,-218.5 1096.5,-218.5 1102.5,-218.5 1108.5,-224.5 1108.5,-230.5 1108.5,-230.5 1108.5,-242.5 1108.5,-242.5 1108.5,-248.5 1102.5,-254.5 1096.5,-254.5"/>
<text text-anchor="middle" x="1032.5" y="-234" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
<g id="edge11" class="edge">
<title>11&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1041.51,-218.32C1046.1,-209.56 1051.77,-198.73 1056.89,-188.97"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1060.02,-190.54 1061.56,-180.06 1053.82,-187.29 1060.02,-190.54"/>
<g id="edge15" class="edge">
<title>11&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1108.81,-220.3C1164.79,-209.15 1241.19,-193.93 1301.19,-181.98"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1301.93,-185.4 1311.06,-180.02 1300.57,-178.54 1301.93,-185.4"/>
<g id="edge20" class="edge">
<title>11&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M976.16,-218.41C941.2,-207.8 896.11,-194.13 859.48,-183.01"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="860.46,-179.65 849.87,-180.1 858.43,-186.35 860.46,-179.65"/>
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="1209.5" y="-245" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="1209.5" y="-234" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="1209.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge12" class="edge">
<title>12&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1171.88,-215.88C1153.51,-206.29 1131.33,-194.73 1112.41,-184.86"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1113.9,-181.69 1103.41,-180.17 1110.66,-187.89 1113.9,-181.69"/>
<g id="edge14" class="edge">
<title>12&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1213.05,-215.69C1214.46,-207.82 1216.11,-198.64 1217.63,-190.17"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1221.07,-190.78 1219.39,-180.32 1214.18,-189.54 1221.07,-190.78"/>
<g id="node14" class="node">
<title>13</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M1427.5,-254.5C1427.5,-254.5 1317.5,-254.5 1317.5,-254.5 1311.5,-254.5 1305.5,-248.5 1305.5,-242.5 1305.5,-242.5 1305.5,-230.5 1305.5,-230.5 1305.5,-224.5 1311.5,-218.5 1317.5,-218.5 1317.5,-218.5 1427.5,-218.5 1427.5,-218.5 1433.5,-218.5 1439.5,-224.5 1439.5,-230.5 1439.5,-230.5 1439.5,-242.5 1439.5,-242.5 1439.5,-248.5 1433.5,-254.5 1427.5,-254.5"/>
<text text-anchor="middle" x="1372.5" y="-234" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<g id="edge13" class="edge">
<title>13&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1336.95,-218.32C1316.03,-208.21 1289.38,-195.33 1267.06,-184.54"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1268.32,-181.26 1257.79,-180.06 1265.27,-187.56 1268.32,-181.26"/>
<g id="edge17" class="edge">
<title>13&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1424.59,-218.41C1456.65,-207.89 1497.91,-194.36 1531.63,-183.3"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1532.96,-186.54 1541.37,-180.1 1530.78,-179.89 1532.96,-186.54"/>
<g id="edge22" class="edge">
<title>13&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1305.35,-219.41C1299.33,-218.18 1293.32,-217.02 1287.5,-216 1159.72,-193.66 1122.81,-204.81 991.39,-180"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="991.82,-176.52 981.34,-178.07 990.5,-183.4 991.82,-176.52"/>
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#c6d856" stroke-width="2" d="M1618,-254.5C1618,-254.5 1503,-254.5 1503,-254.5 1497,-254.5 1491,-248.5 1491,-242.5 1491,-242.5 1491,-230.5 1491,-230.5 1491,-224.5 1497,-218.5 1503,-218.5 1503,-218.5 1618,-218.5 1618,-218.5 1624,-218.5 1630,-224.5 1630,-230.5 1630,-230.5 1630,-242.5 1630,-242.5 1630,-248.5 1624,-254.5 1618,-254.5"/>
<text text-anchor="middle" x="1560.5" y="-239.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="1560.5" y="-228.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge16" class="edge">
<title>14&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1521.63,-218.32C1498.45,-208.07 1468.84,-194.98 1444.24,-184.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1445.65,-180.9 1435.09,-180.06 1442.82,-187.3 1445.65,-180.9"/>
<g id="edge18" class="edge">
<title>14&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1568.32,-218.32C1572.27,-209.65 1577.14,-198.95 1581.54,-189.28"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1584.78,-190.61 1585.74,-180.06 1578.41,-187.71 1584.78,-190.61"/>
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#5692d8" stroke-width="2" d="M901,-257C901,-257 786,-257 786,-257 780,-257 774,-251 774,-245 774,-245 774,-228 774,-228 774,-222 780,-216 786,-216 786,-216 901,-216 901,-216 907,-216 913,-222 913,-228 913,-228 913,-245 913,-245 913,-251 907,-257 901,-257"/>
<text text-anchor="middle" x="843.5" y="-245" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="843.5" y="-234" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="843.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
<g id="edge19" class="edge">
<title>15&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M829.84,-215.69C824.11,-207.39 817.38,-197.63 811.28,-188.78"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="814,-186.56 805.44,-180.32 808.24,-190.54 814,-186.56"/>
<g id="edge21" class="edge">
<title>15&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M866.45,-215.69C876.85,-206.72 889.22,-196.04 900.1,-186.65"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="902.43,-189.26 907.71,-180.08 897.86,-183.96 902.43,-189.26"/>
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#8fd856" stroke-width="2" d="M1179,-329C1179,-329 878,-329 878,-329 872,-329 866,-323 866,-317 866,-317 866,-305 866,-305 866,-299 872,-293 878,-293 878,-293 1179,-293 1179,-293 1185,-293 1191,-299 1191,-305 1191,-305 1191,-317 1191,-317 1191,-323 1185,-329 1179,-329"/>
<text text-anchor="middle" x="1028.5" y="-314" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1028.5" y="-303" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<g id="edge23" class="edge">
<title>16&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1029.45,-292.82C1029.91,-284.42 1030.48,-274.12 1031,-264.69"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1034.5,-264.74 1031.56,-254.56 1027.51,-264.35 1034.5,-264.74"/>
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M1534,-329C1534,-329 1221,-329 1221,-329 1215,-329 1209,-323 1209,-317 1209,-317 1209,-305 1209,-305 1209,-299 1215,-293 1221,-293 1221,-293 1534,-293 1534,-293 1540,-293 1546,-299 1546,-305 1546,-305 1546,-317 1546,-317 1546,-323 1540,-329 1534,-329"/>
<text text-anchor="middle" x="1377.5" y="-314" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1377.5" y="-303" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<title>17&#45;&gt;13</title>
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Alex Kanitz's avatar
Alex Kanitz committed
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