dag_test_workflow.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 0 -->
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<title>0</title>
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<text text-anchor="middle" x="1089.5" y="-15.5" font-family="sans" font-size="10.00">finish</text>
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<text text-anchor="middle" x="162.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="162.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="511.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="511.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="804.5" y="-87.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M873.85,-71.97C930.11,-58.15 1007.22,-39.21 1052.37,-28.12"/>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="1026.5" y="-87.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="1070.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="1222.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="1396.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="1593.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1532.96,-143.94C1427.4,-114.2 1212.71,-53.71 1126.53,-29.43"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1127.24,-26 1116.67,-26.65 1125.34,-32.74 1127.24,-26"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#5673d8" stroke-width="2" d="M844,-180C844,-180 743,-180 743,-180 737,-180 731,-174 731,-168 731,-168 731,-156 731,-156 731,-150 737,-144 743,-144 743,-144 844,-144 844,-144 850,-144 856,-150 856,-156 856,-156 856,-168 856,-168 856,-174 850,-180 844,-180"/>
<text text-anchor="middle" x="793.5" y="-159.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M796.22,-143.7C797.43,-135.98 798.89,-126.71 800.24,-118.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="803.72,-118.53 801.81,-108.1 796.8,-117.44 803.72,-118.53"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="927.5" y="-159.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 10&#45;&gt;4 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M951.72,-143.88C964.42,-134.89 980.16,-123.76 993.92,-114.03"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="1032.5" y="-234" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 11&#45;&gt;5 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1041.51,-218.32C1046.1,-209.56 1051.77,-198.73 1056.89,-188.97"/>
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<!-- 11&#45;&gt;7 -->
<g id="edge15" class="edge">
<title>11&#45;&gt;7</title>
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<!-- 11&#45;&gt;9 -->
<g id="edge20" class="edge">
<title>11&#45;&gt;9</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="860.46,-179.65 849.87,-180.1 858.43,-186.35 860.46,-179.65"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="1209.5" y="-245" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="1209.5" y="-234" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="1209.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 12&#45;&gt;5 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;5</title>
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<!-- 12&#45;&gt;6 -->
<g id="edge14" class="edge">
<title>12&#45;&gt;6</title>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="1372.5" y="-234" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
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<!-- 13&#45;&gt;6 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1336.95,-218.32C1316.03,-208.21 1289.38,-195.33 1267.06,-184.54"/>
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<!-- 13&#45;&gt;8 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;8</title>
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<!-- 13&#45;&gt;10 -->
<g id="edge22" class="edge">
<title>13&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1305.35,-219.41C1299.33,-218.18 1293.32,-217.02 1287.5,-216 1159.72,-193.66 1122.81,-204.81 991.39,-180"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
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<text text-anchor="middle" x="1560.5" y="-239.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="1560.5" y="-228.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 14&#45;&gt;7 -->
<g id="edge16" class="edge">
<title>14&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1521.63,-218.32C1498.45,-208.07 1468.84,-194.98 1444.24,-184.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1445.65,-180.9 1435.09,-180.06 1442.82,-187.3 1445.65,-180.9"/>
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<!-- 14&#45;&gt;8 -->
<g id="edge18" class="edge">
<title>14&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1568.32,-218.32C1572.27,-209.65 1577.14,-198.95 1581.54,-189.28"/>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<text text-anchor="middle" x="843.5" y="-245" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="843.5" y="-234" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="843.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 15&#45;&gt;9 -->
<g id="edge19" class="edge">
<title>15&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M829.84,-215.69C824.11,-207.39 817.38,-197.63 811.28,-188.78"/>
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<!-- 15&#45;&gt;10 -->
<g id="edge21" class="edge">
<title>15&#45;&gt;10</title>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
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<text text-anchor="middle" x="1028.5" y="-314" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1028.5" y="-303" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
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<!-- 16&#45;&gt;11 -->
<g id="edge23" class="edge">
<title>16&#45;&gt;11</title>
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<!-- 17 -->
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<title>17</title>
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<text text-anchor="middle" x="1377.5" y="-314" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1377.5" y="-303" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
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<title>17&#45;&gt;13</title>
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