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<!-- Title: snakemake_dag Pages: 1 -->
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<text text-anchor="middle" x="1294" y="-87.5" font-family="sans" font-size="10.00">MULTIQC_report</text>
<g id="edge1" class="edge"><title>1->0</title>
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<!-- 2->1 -->
<g id="edge2" class="edge"><title>2->1</title>
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<text text-anchor="middle" x="1294" y="-226" font-family="sans" font-size="10.00">output_dir: results</text>
<!-- 3->2 -->
<g id="edge3" class="edge"><title>3->2</title>
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<text text-anchor="middle" x="146" y="-309" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="146" y="-298" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<!-- 4->3 -->
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<text text-anchor="middle" x="462" y="-309" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="462" y="-298" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<!-- 5->3 -->
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<!-- 6->3 -->
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<!-- 7->3 -->
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<!-- 8 -->
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<text text-anchor="middle" x="1430" y="-375.5" font-family="sans" font-size="10.00">plot_TIN_scores</text>
<!-- 8->3 -->
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<!-- 9 -->
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<text text-anchor="middle" x="1085" y="-309" font-family="sans" font-size="10.00">salmon_quantmerge_genes</text>
<text text-anchor="middle" x="1085" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: tpm</text>
<!-- 9->3 -->
<g id="edge9" class="edge"><title>9->3</title>
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<!-- 10 -->
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<text text-anchor="middle" x="1244" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
<!-- 10->3 -->
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<!-- 11 -->
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<!-- 11->3 -->
<g id="edge11" class="edge"><title>11->3</title>
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<!-- 12 -->
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<text text-anchor="middle" x="921" y="-298" font-family="sans" font-size="10.00">salmon_merge_on: numreads</text>
<!-- 12->3 -->
<g id="edge12" class="edge"><title>12->3</title>
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<!-- 13->3 -->
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<!-- 28 -->
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<text text-anchor="middle" x="1436" y="-447.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
<!-- 13->28 -->
<g id="edge56" class="edge"><title>13->28</title>
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<!-- 14 -->
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<!-- 14->3 -->
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<!-- 30 -->
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<text text-anchor="middle" x="1824" y="-447.5" font-family="sans" font-size="10.00">rename_star_rpm_for_alfa</text>
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<!-- 14->30 -->
<g id="edge58" class="edge"><title>14->30</title>
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<text text-anchor="middle" x="1534" y="-375.5" font-family="sans" font-size="10.00">alfa_qc</text>
<!-- 15->3 -->
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<!-- 17 -->
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<text text-anchor="middle" x="1540" y="-303.5" font-family="sans" font-size="10.00">alfa_qc_all_samples</text>
<!-- 15->17 -->
<g id="edge39" class="edge"><title>15->17</title>
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<text text-anchor="middle" x="1669" y="-375.5" font-family="sans" font-size="10.00">alfa_qc</text>
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<!-- 16->17 -->
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<!-- 18 -->
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<!-- 18->6 -->
<g id="edge18" class="edge"><title>18->6</title>
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<!-- 22 -->
<g id="node23" class="node"><title>22</title>
<path fill="none" stroke="#d89556" stroke-width="2" d="M975.5,-396C975.5,-396 872.5,-396 872.5,-396 866.5,-396 860.5,-390 860.5,-384 860.5,-384 860.5,-372 860.5,-372 860.5,-366 866.5,-360 872.5,-360 872.5,-360 975.5,-360 975.5,-360 981.5,-360 987.5,-366 987.5,-372 987.5,-372 987.5,-384 987.5,-384 987.5,-390 981.5,-396 975.5,-396"/>
<text text-anchor="middle" x="924" y="-375.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
<!-- 18->22 -->
<g id="edge46" class="edge"><title>18->22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M860,-722.151C860,-695.022 860,-640.909 860,-595 860,-595 860,-595 860,-521 860,-480.458 862.112,-468.382 880,-432 884.958,-421.915 892.205,-412.093 899.392,-403.699"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="902.113,-405.907 906.188,-396.127 896.904,-401.232 902.113,-405.907"/>
<!-- 24 -->
<g id="node25" class="node"><title>24</title>
<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1387.5,-684C1387.5,-684 1298.5,-684 1298.5,-684 1292.5,-684 1286.5,-678 1286.5,-672 1286.5,-672 1286.5,-660 1286.5,-660 1286.5,-654 1292.5,-648 1298.5,-648 1298.5,-648 1387.5,-648 1387.5,-648 1393.5,-648 1399.5,-654 1399.5,-660 1399.5,-660 1399.5,-672 1399.5,-672 1399.5,-678 1393.5,-684 1387.5,-684"/>
<text text-anchor="middle" x="1343" y="-663.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
<!-- 18->24 -->
<g id="edge51" class="edge"><title>18->24</title>
<path fill="none" stroke="grey" stroke-width="2" d="M928.178,-729.266C1020.66,-715.384 1184.83,-690.742 1276.46,-676.988"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1277.08,-680.433 1286.45,-675.488 1276.05,-673.511 1277.08,-680.433"/>
<!-- 19 -->
<g id="node20" class="node"><title>19</title>
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<text text-anchor="middle" x="1070" y="-447.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<g id="edge19" class="edge"><title>19->6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1015.75,-434.165C1012.79,-433.418 1009.86,-432.692 1007,-432 956.065,-419.694 898.887,-407.375 852.28,-397.715"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="852.7,-394.228 842.199,-395.632 851.284,-401.083 852.7,-394.228"/>
<g id="edge21" class="edge"><title>19->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1104.25,-431.876C1123.06,-422.469 1146.58,-410.708 1166.67,-400.667"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1168.24,-403.792 1175.62,-396.19 1165.11,-397.531 1168.24,-403.792"/>
<!-- 20 -->
<g id="node21" class="node"><title>20</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M1238,-758.5C1238,-758.5 1142,-758.5 1142,-758.5 1136,-758.5 1130,-752.5 1130,-746.5 1130,-746.5 1130,-734.5 1130,-734.5 1130,-728.5 1136,-722.5 1142,-722.5 1142,-722.5 1238,-722.5 1238,-722.5 1244,-722.5 1250,-728.5 1250,-734.5 1250,-734.5 1250,-746.5 1250,-746.5 1250,-752.5 1244,-758.5 1238,-758.5"/>
<text text-anchor="middle" x="1190" y="-738" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
<g id="edge20" class="edge"><title>20->7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1190,-722.151C1190,-695.022 1190,-640.909 1190,-595 1190,-595 1190,-595 1190,-521 1190,-480.822 1197.95,-434.869 1203.82,-406.389"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1207.3,-406.887 1205.95,-396.378 1200.45,-405.431 1207.3,-406.887"/>
<!-- 23 -->
<g id="node24" class="node"><title>23</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M1104.5,-396C1104.5,-396 1017.5,-396 1017.5,-396 1011.5,-396 1005.5,-390 1005.5,-384 1005.5,-384 1005.5,-372 1005.5,-372 1005.5,-366 1011.5,-360 1017.5,-360 1017.5,-360 1104.5,-360 1104.5,-360 1110.5,-360 1116.5,-366 1116.5,-372 1116.5,-372 1116.5,-384 1116.5,-384 1116.5,-390 1110.5,-396 1104.5,-396"/>
<text text-anchor="middle" x="1061" y="-375.5" font-family="sans" font-size="10.00">quantification_salmon</text>
<!-- 20->23 -->
<g id="edge48" class="edge"><title>20->23</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1182.31,-722.093C1171.21,-695.328 1152,-642.21 1152,-595 1152,-595 1152,-595 1152,-521 1152,-480.553 1154.94,-465.98 1133,-432 1125.28,-420.038 1113.84,-409.843 1102.35,-401.685"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1104.28,-398.765 1094.02,-396.109 1100.39,-404.581 1104.28,-398.765"/>
<!-- 26 -->
<g id="node27" class="node"><title>26</title>
<path fill="none" stroke="#56d88a" stroke-width="2" d="M1753.5,-684C1753.5,-684 1680.5,-684 1680.5,-684 1674.5,-684 1668.5,-678 1668.5,-672 1668.5,-672 1668.5,-660 1668.5,-660 1668.5,-654 1674.5,-648 1680.5,-648 1680.5,-648 1753.5,-648 1753.5,-648 1759.5,-648 1765.5,-654 1765.5,-660 1765.5,-660 1765.5,-672 1765.5,-672 1765.5,-678 1759.5,-684 1753.5,-684"/>
<text text-anchor="middle" x="1717" y="-663.5" font-family="sans" font-size="10.00">map_genome_star</text>
<!-- 20->26 -->
<g id="edge54" class="edge"><title>20->26</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1250.2,-731.219C1352.16,-717.192 1557.56,-688.934 1658.42,-675.059"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1659,-678.512 1668.43,-673.682 1658.05,-671.577 1659,-678.512"/>
<!-- 21 -->
<g id="node22" class="node"><title>21</title>
<path fill="none" stroke="#97d856" stroke-width="2" d="M1607,-468C1607,-468 1531,-468 1531,-468 1525,-468 1519,-462 1519,-456 1519,-456 1519,-444 1519,-444 1519,-438 1525,-432 1531,-432 1531,-432 1607,-432 1607,-432 1613,-432 1619,-438 1619,-444 1619,-444 1619,-456 1619,-456 1619,-462 1613,-468 1607,-468"/>
<text text-anchor="middle" x="1569" y="-447.5" font-family="sans" font-size="10.00">merge_TIN_scores</text>
<!-- 21->8 -->
<g id="edge22" class="edge"><title>21->8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1535,-431.876C1516.4,-422.512 1493.17,-410.814 1473.29,-400.803"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1474.64,-397.562 1464.13,-396.19 1471.49,-403.814 1474.64,-397.562"/>
<!-- 22->9 -->
<g id="edge23" class="edge"><title>22->9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M963.385,-359.876C985.395,-350.307 1013.01,-338.3 1036.36,-328.148"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1037.97,-331.265 1045.74,-324.068 1035.18,-324.846 1037.97,-331.265"/>
<g id="edge25" class="edge"><title>22->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M987.686,-362.1C990.834,-361.385 993.952,-360.682 997,-360 1051.64,-347.776 1113.21,-334.563 1161.21,-324.387"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1162.19,-327.759 1171.24,-322.264 1160.74,-320.911 1162.19,-327.759"/>
</g>
<!-- 22->11 -->
<g id="edge27" class="edge"><title>22->11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M880.946,-359.876C856.671,-350.222 826.16,-338.087 800.492,-327.878"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="801.5,-324.512 790.915,-324.068 798.913,-331.016 801.5,-324.512"/>
</g>
<!-- 22->12 -->
<g id="edge29" class="edge"><title>22->12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M923.258,-359.697C922.928,-351.983 922.531,-342.712 922.162,-334.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="925.658,-333.945 921.733,-324.104 918.665,-334.245 925.658,-333.945"/>
</g>
<!-- 23->9 -->
<g id="edge24" class="edge"><title>23->9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1066.93,-359.697C1069.61,-351.898 1072.83,-342.509 1075.8,-333.829"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1079.2,-334.699 1079.14,-324.104 1072.58,-332.429 1079.2,-334.699"/>
</g>
<!-- 23->10 -->
<g id="edge26" class="edge"><title>23->10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1105.77,-359.876C1131.12,-350.179 1163.01,-337.98 1189.77,-327.743"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1191.29,-330.91 1199.38,-324.068 1188.79,-324.372 1191.29,-330.91"/>
<g id="edge28" class="edge"><title>23->11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1005.19,-362.001C1002.43,-361.312 999.684,-360.642 997,-360 943.625,-347.239 883.449,-334.389 835.625,-324.537"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="836.114,-321.065 825.615,-322.482 834.706,-327.922 836.114,-321.065"/>
<!-- 23->12 -->
<g id="edge30" class="edge"><title>23->12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1026.75,-359.876C1007.94,-350.469 984.415,-338.708 964.334,-328.667"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="965.889,-325.531 955.38,-324.19 962.759,-331.792 965.889,-325.531"/>
BIOPZ-Iborra de Toledo Paula
committed
</g>
<!-- 24->13 -->
<g id="edge31" class="edge"><title>24->13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1289.78,-647.963C1273.11,-639.835 1256.58,-628.231 1247,-612 1238.87,-598.221 1238.87,-589.779 1247,-576 1259.61,-554.628 1284.27,-541.279 1305.44,-533.324"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1306.88,-536.53 1315.17,-529.94 1304.58,-529.918 1306.88,-536.53"/>
<!-- 25 -->
<g id="node26" class="node"><title>25</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1418,-612C1418,-612 1268,-612 1268,-612 1262,-612 1256,-606 1256,-600 1256,-600 1256,-588 1256,-588 1256,-582 1262,-576 1268,-576 1268,-576 1418,-576 1418,-576 1424,-576 1430,-582 1430,-588 1430,-588 1430,-600 1430,-600 1430,-606 1424,-612 1418,-612"/>
<text text-anchor="middle" x="1343" y="-597" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1343" y="-586" font-family="sans" font-size="10.00">seqmode: paired_end</text>
<!-- 24->25 -->
<g id="edge52" class="edge"><title>24->25</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1343,-647.697C1343,-639.983 1343,-630.712 1343,-622.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1346.5,-622.104 1343,-612.104 1339.5,-622.104 1346.5,-622.104"/>
<!-- 34 -->
<g id="node35" class="node"><title>34</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M1520,-540C1520,-540 1432,-540 1432,-540 1426,-540 1420,-534 1420,-528 1420,-528 1420,-516 1420,-516 1420,-510 1426,-504 1432,-504 1432,-504 1520,-504 1520,-504 1526,-504 1532,-510 1532,-516 1532,-516 1532,-528 1532,-528 1532,-534 1526,-540 1520,-540"/>
<text text-anchor="middle" x="1476" y="-519.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
<!-- 24->34 -->
<g id="edge59" class="edge"><title>24->34</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1387.92,-647.937C1405.7,-639.364 1425.16,-627.461 1439,-612 1454.73,-594.433 1464.35,-569.241 1469.82,-550.14"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1473.27,-550.805 1472.45,-540.242 1466.5,-549.01 1473.27,-550.805"/>
<!-- 25->13 -->
<g id="edge32" class="edge"><title>25->13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1343,-575.697C1343,-567.983 1343,-558.712 1343,-550.112"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1346.5,-550.104 1343,-540.104 1339.5,-550.104 1346.5,-550.104"/>
<!-- 25->34 -->
<g id="edge60" class="edge"><title>25->34</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1375.54,-575.876C1393.25,-566.554 1415.35,-554.919 1434.32,-544.939"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1436.12,-547.944 1443.34,-540.19 1432.86,-541.75 1436.12,-547.944"/>
<!-- 26->14 -->
<g id="edge33" class="edge"><title>26->14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1765.69,-662.525C1801.26,-657.86 1847.27,-645.261 1871,-612 1884.22,-593.466 1875.57,-567.952 1865.31,-548.991"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1868.29,-547.152 1860.23,-540.269 1862.24,-550.673 1868.29,-547.152"/>
<!-- 27 -->
<g id="node28" class="node"><title>27</title>
<path fill="none" stroke="#d8b456" stroke-width="2" d="M1850,-612C1850,-612 1700,-612 1700,-612 1694,-612 1688,-606 1688,-600 1688,-600 1688,-588 1688,-588 1688,-582 1694,-576 1700,-576 1700,-576 1850,-576 1850,-576 1856,-576 1862,-582 1862,-588 1862,-588 1862,-600 1862,-600 1862,-606 1856,-612 1850,-612"/>
<text text-anchor="middle" x="1775" y="-597" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
<text text-anchor="middle" x="1775" y="-586" font-family="sans" font-size="10.00">seqmode: single_end</text>
<!-- 26->27 -->
<g id="edge55" class="edge"><title>26->27</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1731.34,-647.697C1738.29,-639.305 1746.77,-629.07 1754.4,-619.861"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1757.14,-622.038 1760.83,-612.104 1751.75,-617.571 1757.14,-622.038"/>
<!-- 35 -->
<g id="node36" class="node"><title>35</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M1668,-540C1668,-540 1580,-540 1580,-540 1574,-540 1568,-534 1568,-528 1568,-528 1568,-516 1568,-516 1568,-510 1574,-504 1580,-504 1580,-504 1668,-504 1668,-504 1674,-504 1680,-510 1680,-516 1680,-516 1680,-528 1680,-528 1680,-534 1674,-540 1668,-540"/>
<text text-anchor="middle" x="1624" y="-519.5" font-family="sans" font-size="10.00">calculate_TIN_scores</text>
</g>
<!-- 26->35 -->
<g id="edge62" class="edge"><title>26->35</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1704.03,-647.545C1696.54,-637.31 1687.04,-624.06 1679,-612 1665.11,-591.148 1650.21,-566.925 1639.44,-549.019"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1642.34,-547.061 1634.2,-540.282 1636.34,-550.659 1642.34,-547.061"/>
</g>
<!-- 27->14 -->
<g id="edge34" class="edge"><title>27->14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1793.04,-575.697C1802.06,-567.05 1813.12,-556.449 1822.94,-547.027"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1825.37,-549.552 1830.16,-540.104 1820.52,-544.499 1825.37,-549.552"/>
</g>
<!-- 27->35 -->
<g id="edge63" class="edge"><title>27->35</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1738.06,-575.876C1717.51,-566.349 1691.75,-554.407 1669.91,-544.283"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1671.36,-541.099 1660.82,-540.068 1668.42,-547.45 1671.36,-541.099"/>
<g id="edge35" class="edge"><title>28->15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1459.97,-431.876C1472.55,-422.893 1488.13,-411.763 1501.75,-402.034"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1503.83,-404.85 1509.93,-396.19 1499.76,-399.154 1503.83,-404.85"/>
<g id="node30" class="node"><title>29</title>
<path fill="none" stroke="#a7d856" stroke-width="2" d="M1729,-468C1729,-468 1649,-468 1649,-468 1643,-468 1637,-462 1637,-456 1637,-456 1637,-444 1637,-444 1637,-438 1643,-432 1649,-432 1649,-432 1729,-432 1729,-432 1735,-432 1741,-438 1741,-444 1741,-444 1741,-456 1741,-456 1741,-462 1735,-468 1729,-468"/>
<text text-anchor="middle" x="1689" y="-447.5" font-family="sans" font-size="10.00">generate_alfa_index</text>
<!-- 29->15 -->
<g id="edge36" class="edge"><title>29->15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1651.08,-431.876C1626.56,-420.799 1594.8,-406.457 1570.55,-395.504"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1571.87,-392.264 1561.32,-391.338 1568.99,-398.643 1571.87,-392.264"/>
<!-- 29->16 -->
<g id="edge38" class="edge"><title>29->16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1684.06,-431.697C1681.83,-423.898 1679.15,-414.509 1676.67,-405.829"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1680,-404.758 1673.89,-396.104 1673.27,-406.681 1680,-404.758"/>
<!-- 30->16 -->
<g id="edge37" class="edge"><title>30->16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1786.08,-431.876C1761.56,-420.799 1729.8,-406.457 1705.55,-395.504"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="1706.87,-392.264 1696.32,-391.338 1703.99,-398.643 1706.87,-392.264"/>
<!-- 31 -->
<g id="node32" class="node"><title>31</title>
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<text text-anchor="middle" x="860" y="-818" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="860" y="-807" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired_synthetic_10_reads_paired</text>
<g id="edge41" class="edge"><title>31->18</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="863.5,-768.558 860,-758.558 856.5,-768.558 863.5,-768.558"/>
<!-- 32 -->
<g id="node33" class="node"><title>32</title>
<path fill="none" stroke="#78d856" stroke-width="2" d="M1056.5,-540C1056.5,-540 955.5,-540 955.5,-540 949.5,-540 943.5,-534 943.5,-528 943.5,-528 943.5,-516 943.5,-516 943.5,-510 949.5,-504 955.5,-504 955.5,-504 1056.5,-504 1056.5,-504 1062.5,-504 1068.5,-510 1068.5,-516 1068.5,-516 1068.5,-528 1068.5,-528 1068.5,-534 1062.5,-540 1056.5,-540"/>
<text text-anchor="middle" x="1006" y="-525" font-family="sans" font-size="10.00">extract_transcriptome</text>
<text text-anchor="middle" x="1006" y="-514" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 32->19 -->
<g id="edge42" class="edge"><title>32->19</title>
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<!-- 36 -->
<g id="node37" class="node"><title>36</title>
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<text text-anchor="middle" x="943" y="-453" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="943" y="-442" font-family="sans" font-size="10.00">kmer: 31</text>
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<g id="edge65" class="edge"><title>32->36</title>
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<!-- 33 -->
<g id="node34" class="node"><title>33</title>
<path fill="none" stroke="#56b9d8" stroke-width="2" d="M1330,-833C1330,-833 1050,-833 1050,-833 1044,-833 1038,-827 1038,-821 1038,-821 1038,-809 1038,-809 1038,-803 1044,-797 1050,-797 1050,-797 1330,-797 1330,-797 1336,-797 1342,-803 1342,-809 1342,-809 1342,-821 1342,-821 1342,-827 1336,-833 1330,-833"/>
<text text-anchor="middle" x="1190" y="-818" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1190" y="-807" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1</text>
<g id="edge43" class="edge"><title>33->20</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="1193.5,-768.558 1190,-758.558 1186.5,-768.558 1193.5,-768.558"/>
491
492
493
494
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496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
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530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
<g id="edge44" class="edge"><title>34->21</title>
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<g id="edge45" class="edge"><title>35->21</title>
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<g id="edge47" class="edge"><title>36->22</title>
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<g id="edge49" class="edge"><title>36->23</title>
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<!-- 37 -->
<g id="node38" class="node"><title>37</title>
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<text text-anchor="middle" x="1717" y="-749" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="1717" y="-738" font-family="sans" font-size="10.00">index_size: 75</text>
<text text-anchor="middle" x="1717" y="-727" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 37->24 -->
<g id="edge50" class="edge"><title>37->24</title>
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<!-- 37->26 -->
<g id="edge53" class="edge"><title>37->26</title>
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<!-- 37->29 -->
<g id="edge57" class="edge"><title>37->29</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1763.03,-719.97C1804.26,-699.684 1862.09,-663.634 1888,-612 1896.33,-595.398 1897.01,-518.975 1885,-504 1848.05,-457.922 1813.46,-481.709 1751.06,-468.017"/>
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<!-- 38 -->
<g id="node39" class="node"><title>38</title>
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<text text-anchor="middle" x="1559" y="-591.5" font-family="sans" font-size="10.00">extract_transcripts_as_bed12</text>
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<!-- 38->34 -->
<g id="edge61" class="edge"><title>38->34</title>
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<!-- 38->35 -->
<g id="edge64" class="edge"><title>38->35</title>
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