dag_test_workflow.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<text text-anchor="middle" x="94.5" y="-93" font-family="sans" font-size="10.00">pe_fastqc</text>
<text text-anchor="middle" x="94.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired</text>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="304.5" y="-93" font-family="sans" font-size="10.00">fastqc</text>
<text text-anchor="middle" x="304.5" y="-82" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M402.1,-73.24C404.93,-72.82 407.73,-72.4 410.5,-72 544,-52.48 702.99,-32.4 774.01,-23.6"/>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="526.5" y="-87.5" font-family="sans" font-size="10.00">pe_index_genomic_alignment_samtools</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="748.5" y="-87.5" font-family="sans" font-size="10.00">index_genomic_alignment_samtools</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="792.5" y="-159.5" font-family="sans" font-size="10.00">pe_quantification_salmon</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="944.5" y="-159.5" font-family="sans" font-size="10.00">quantification_salmon</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="1118.5" y="-159.5" font-family="sans" font-size="10.00">pe_genome_quantification_kallisto</text>
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<!-- 7&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;0</title>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="1315.5" y="-159.5" font-family="sans" font-size="10.00">genome_quantification_kallisto</text>
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<!-- 8&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1254.96,-143.94C1149.4,-114.2 934.71,-53.71 848.53,-29.43"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="849.24,-26 838.67,-26.65 847.34,-32.74 849.24,-26"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="515.5" y="-159.5" font-family="sans" font-size="10.00">pe_map_genome_star</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M518.22,-143.7C519.43,-135.98 520.89,-126.71 522.24,-118.11"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="649.5" y="-159.5" font-family="sans" font-size="10.00">map_genome_star</text>
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<!-- 10&#45;&gt;4 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;4</title>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d88d56" stroke-width="2" d="M818.5,-254.5C818.5,-254.5 690.5,-254.5 690.5,-254.5 684.5,-254.5 678.5,-248.5 678.5,-242.5 678.5,-242.5 678.5,-230.5 678.5,-230.5 678.5,-224.5 684.5,-218.5 690.5,-218.5 690.5,-218.5 818.5,-218.5 818.5,-218.5 824.5,-218.5 830.5,-224.5 830.5,-230.5 830.5,-230.5 830.5,-242.5 830.5,-242.5 830.5,-248.5 824.5,-254.5 818.5,-254.5"/>
<text text-anchor="middle" x="754.5" y="-234" font-family="sans" font-size="10.00">pe_remove_polya_cutadapt</text>
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<!-- 11&#45;&gt;5 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;5</title>
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<!-- 11&#45;&gt;7 -->
<g id="edge15" class="edge">
<title>11&#45;&gt;7</title>
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<!-- 11&#45;&gt;9 -->
<g id="edge20" class="edge">
<title>11&#45;&gt;9</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="582.46,-179.65 571.87,-180.1 580.43,-186.35 582.46,-179.65"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="918.5" y="-245" font-family="sans" font-size="10.00">create_index_salmon</text>
<text text-anchor="middle" x="918.5" y="-234" font-family="sans" font-size="10.00">kmer: 31</text>
<text text-anchor="middle" x="918.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 12&#45;&gt;5 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;5</title>
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<!-- 12&#45;&gt;6 -->
<g id="edge14" class="edge">
<title>12&#45;&gt;6</title>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="1073.5" y="-234" font-family="sans" font-size="10.00">remove_polya_cutadapt</text>
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<!-- 13&#45;&gt;6 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;6</title>
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<!-- 13&#45;&gt;8 -->
<g id="edge17" class="edge">
<title>13&#45;&gt;8</title>
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<!-- 13&#45;&gt;10 -->
<g id="edge22" class="edge">
<title>13&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1009.36,-218.44C1005.36,-217.56 1001.38,-216.74 997.5,-216 875.27,-192.69 839.56,-204.07 713.39,-180.01"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M1329,-254.5C1329,-254.5 1214,-254.5 1214,-254.5 1208,-254.5 1202,-248.5 1202,-242.5 1202,-242.5 1202,-230.5 1202,-230.5 1202,-224.5 1208,-218.5 1214,-218.5 1214,-218.5 1329,-218.5 1329,-218.5 1335,-218.5 1341,-224.5 1341,-230.5 1341,-230.5 1341,-242.5 1341,-242.5 1341,-248.5 1335,-254.5 1329,-254.5"/>
<text text-anchor="middle" x="1271.5" y="-239.5" font-family="sans" font-size="10.00">create_index_kallisto</text>
<text text-anchor="middle" x="1271.5" y="-228.5" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 14&#45;&gt;7 -->
<g id="edge16" class="edge">
<title>14&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1235.24,-218.32C1213.81,-208.16 1186.48,-195.21 1163.65,-184.39"/>
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<!-- 14&#45;&gt;8 -->
<g id="edge18" class="edge">
<title>14&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M1281.93,-218.32C1287.3,-209.47 1293.95,-198.5 1299.92,-188.67"/>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<text text-anchor="middle" x="565.5" y="-245" font-family="sans" font-size="10.00">create_index_star</text>
<text text-anchor="middle" x="565.5" y="-234" font-family="sans" font-size="10.00">index_size: 76</text>
<text text-anchor="middle" x="565.5" y="-223" font-family="sans" font-size="10.00">organism: homo_sapiens</text>
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<!-- 15&#45;&gt;9 -->
<g id="edge19" class="edge">
<title>15&#45;&gt;9</title>
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<!-- 15&#45;&gt;10 -->
<g id="edge21" class="edge">
<title>15&#45;&gt;10</title>
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<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
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<text text-anchor="middle" x="754.5" y="-314" font-family="sans" font-size="10.00">pe_remove_adapters_cutadapt</text>
<text text-anchor="middle" x="754.5" y="-303" font-family="sans" font-size="10.00">sample: synthetic_10_reads_paired</text>
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<!-- 16&#45;&gt;11 -->
<g id="edge23" class="edge">
<title>16&#45;&gt;11</title>
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<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
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<text text-anchor="middle" x="1073.5" y="-314" font-family="sans" font-size="10.00">remove_adapters_cutadapt</text>
<text text-anchor="middle" x="1073.5" y="-303" font-family="sans" font-size="10.00">sample: synthetic_10_reads_mate_1</text>
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<title>17&#45;&gt;13</title>
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