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10e8891c

Commit 10e8891c authored 3 years ago by Alex Kanitz

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Merge branch 'rule_config_params' into 'dev'

feat: enable user to configure CLI params per rule

See merge request !83

parents 378f6aed d35d5500

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Snakefile 404 additions, 90 deletions

Snakefile
pipeline_documentation.md 56 additions, 52 deletions

pipeline_documentation.md
tests/input_files/config.mutliple_lanes.yml 2 additions, 1 deletion

tests/input_files/config.mutliple_lanes.yml
tests/input_files/config.yaml 2 additions, 1 deletion

tests/input_files/config.yaml
tests/input_files/rule_config.yaml 148 additions, 0 deletions

tests/input_files/rule_config.yaml
workflow/rules/paired_end.snakefile.smk 100 additions, 28 deletions

workflow/rules/paired_end.snakefile.smk
workflow/rules/single_end.snakefile.smk 95 additions, 24 deletions

workflow/rules/single_end.snakefile.smk
workflow/scripts/zarp_multiqc_config.py 3 additions, 3 deletions

workflow/scripts/zarp_multiqc_config.py

with 810 additions and 199 deletions

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