Commits · 10e8891c6991149d12140d1ba31fb1425a3b1a40 · zavolan_group / pipelines / ZARP · GitLab

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Apr 15, 2021
- Merge branch 'rule_config_params' into 'dev' · 10e8891c
  Alex Kanitz authored 4 years ago
  10e8891c
- feat: enable user to configure CLI params per rule · d35d5500
  CJHerrmann authored 4 years ago and Alex Kanitz committed 4 years ago
  
  d35d5500
Mar 25, 2021
- Merge branch 'remove_defaults' into 'dev' · 378f6aed
  BIOPZ-Gypas Foivos authored 4 years ago
  378f6aed
- Remove extra parameters, that had or should have the default values · 5396adf5
  BIOPZ-Katsantoni Maria authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  5396adf5
Feb 26, 2021
- - use of... · 6b6b2830
  BIOPZ-Gypas Foivos authored 4 years ago
  6b6b2830
- Remove unnecessary files in the results directory · 6804ea67
  Dominik Burri authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  
  6804ea67
Feb 11, 2021
- Merge branch 'multiqc-plugins' into 'dev' · 736d1a3d
  BIOPZ-Gypas Foivos authored 4 years ago
  736d1a3d
- MultiQC plugins for TIN scores and ALFA Fixes #138 · fab75506
  BIOPZ-Bak Maciej authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  
  fab75506
Oct 16, 2020
- Merge branch 'pca' into 'dev' · f67aafb2
  BIOPZ-Gypas Foivos authored 4 years ago
  f67aafb2
- - Delete unused files scripts/fg_extract_transcripts.py,... · c535a892
  BIOPZ-Gypas Foivos authored 4 years ago
  c535a892
Jun 25, 2020
- Merge branch 'patch-1' into 'dev' · 2bdcf390
  Alex Kanitz authored 4 years ago
  2bdcf390
Jun 23, 2020
- Merge branch 'merge_kallisto' into 'dev' · 2f28725d
  BIOPZ-Gypas Foivos authored 4 years ago
  2f28725d
- Merge kallisto rules: kallisto_merge_genes and kallisto_merge_transcript · 1f007e19
  BIOPZ-Iborra de Toledo Paula authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  1f007e19
Jun 18, 2020
- Merge branch 'incr_memory_cluster_json' into 'dev' · 1c00ccb0
  Alex Kanitz authored 4 years ago
  1c00ccb0
- Increase memory for salmon index · 595f881e
  BIOPZ-Börsch Anastasiya authored 4 years ago
  
  595f881e
Jun 17, 2020
- Increase memory for some rules · b72a811a
  BIOPZ-Börsch Anastasiya authored 4 years ago
  
  b72a811a
- Update README.md · e331f10e
  MihaelaZavolan authored 4 years ago
  
  e331f10e
Jun 15, 2020
- Merge branch 'multiple_lane_samples' into 'dev' · ce1b6162
  Alex Kanitz authored 4 years ago
  ce1b6162
- fix: Renamed samples_concat.tsv to samples.multiple_lanes.tsv. Renamed rows... · 05c167fd
  BIOPZ-Katsantoni Maria authored 4 years ago and Alex Kanitz committed 4 years ago
  05c167fd
- Merge branch 'update_labKey_parameters' into 'dev' · 12ce435b
  Alex Kanitz authored 4 years ago
  12ce435b
- refactor: rename LabKey/input table column · 82c4dcea
  BIOPZ-Börsch Anastasiya authored 4 years ago and Alex Kanitz committed 4 years ago
  
  82c4dcea
Jun 12, 2020
- Merge branch 'SnakemakeReport' into 'dev' · 1aa8e146
  Alex Kanitz authored 4 years ago
  1aa8e146
- Add Snakemake report · f7cda546
  BIOPZ-Bak Maciej authored 4 years ago and Alex Kanitz committed 4 years ago
  
  f7cda546
- Merge branch 'rename' into 'dev' · 196941bf
  Alex Kanitz authored 4 years ago
  196941bf
- docs: rename project/workflow · a07e1173
  Alex Kanitz authored 4 years ago
  
  a07e1173
- Merge branch 'fix_labkey_test' into 'dev' · ef2c6624
  Alex Kanitz authored 4 years ago
  ef2c6624
- fix(prepare_inputs): support relative paths · 402da16e
  Alex Kanitz authored 4 years ago
  
  402da16e
- Merge branch 'salmon_argument_fix' into 'dev' · 416a60f7
  BIOPZ-Gypas Foivos authored 4 years ago
  416a60f7
- fix: added arguments for fragment size mean and sd required for the salmon... · 8af815fb
  BIOPZ-Katsantoni Maria authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  8af815fb
- Set STAR multimapper parameter `--outFilterMultimapScoreRange` to `0` · 7c74291b
  BIOPZ-Gypas Foivos authored 4 years ago
  
  7c74291b
Jun 11, 2020
- Set appropriate parameter. Fixes #83 · 3a9ec893
  Dominik Burri authored 4 years ago
  
  3a9ec893
Jun 10, 2020
- Merge branch 'gtf2bed_update' into 'dev' · 443c7950
  Alex Kanitz authored 4 years ago
  443c7950
- refactor: use zgtf for GTF to BED12 conversion · b62f3bf1
  BIOPZ-Gypas Foivos authored 4 years ago and Alex Kanitz committed 4 years ago
  
  b62f3bf1
Apr 28, 2020
- Merge branch 'update_pipeline_docs' into 'master' · 4dd1ad78
  Alex Kanitz authored 5 years ago
  View commits for tag v0.1.0 v0.1.0
  
  4dd1ad78
- Extend workflow description · 80453305
  Alex Kanitz authored 5 years ago
  80453305
Apr 27, 2020
- Merge branch 'refactor' into 'master' · fc53c215
  Alex Kanitz authored 5 years ago
  fc53c215
- Refactor LabKey to Snakemake script · 556f1e12
  Alex Kanitz authored 5 years ago
  556f1e12
- Major refactoring · 6cf28511
  BIOPZ-Katsantoni Maria authored 5 years ago and Alex Kanitz committed 5 years ago
  6cf28511
- Add rules for bigWig creation · 907082c3
  CJHerrmann authored 5 years ago and Alex Kanitz committed 5 years ago
  
  907082c3
Mar 25, 2020
- Merge branch 'new_salmon_index' into 'master' · ca049a0c
  Alex Kanitz authored 5 years ago
  ca049a0c