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Commit 1d39fe8f authored by Dominik Burri's avatar Dominik Burri
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remove todo statements

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...@@ -156,7 +156,6 @@ rule generate_alfa_index: ...@@ -156,7 +156,6 @@ rule generate_alfa_index:
-p {threads} \ -p {threads} \
-o {params.out_dir} &> {log}" -o {params.out_dir} &> {log}"
# TODO: test with chr21.bam
# add singularity-args to this chr21.bam path # add singularity-args to this chr21.bam path
rule star_rpm_stranded: rule star_rpm_stranded:
''' Create stranded bedgraph coverage with STARs RPM normalisation ''' ''' Create stranded bedgraph coverage with STARs RPM normalisation '''
...@@ -188,7 +187,6 @@ rule star_rpm_stranded: ...@@ -188,7 +187,6 @@ rule star_rpm_stranded:
--outFileNamePrefix {params.filenameprefix}) &> {log} --outFileNamePrefix {params.filenameprefix}) &> {log}
""" """
# TODO: test with chr21.bam
rule run_alfa_bg_stranded: rule run_alfa_bg_stranded:
''' Run ALFA from stranded bedgraph files ''' ''' Run ALFA from stranded bedgraph files '''
input: input:
......
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