Update table of contents pipeline_documentation.md

pipeline_documentation.md

@@ -30,6 +30,8 @@ on installation and usage please see [here](README.md).
     - [**plot_TIN_scores**](#plot_tin_scores)
     - [**salmon_quantmerge_genes**](#salmon_quantmerge_genes)
     - [**salmon_quantmerge_transcripts**](#salmon_quantmerge_transcripts)
+    - [**kallisto_merge_genes**](#kallisto_merge_genes)
+    - [**kallisto_merge_transcripts**](#kallisto_merge_transcripts)
     - [**generate_alfa_index**](#generate_alfa_index)
     - [**alfa_qc**](#alfa_qc)
     - [**alfa_qc_all_samples**](#alfa_qc_all_samples)
@@ -37,7 +39,7 @@ on installation and usage please see [here](README.md).
     - [**prepare_multiqc_config**](#prepare_multiqc_config)
     - [**multiqc_report**](#multiqc_report)
     - [**finish**](#finish)
-  - [**Sequencing mode-specific**](#sequencing-mode-specific)
+    - [**Sequencing mode-specific**](#sequencing-mode-specific)
     - [**remove_adapters_cutadapt**](#remove_adapters_cutadapt)
     - [**remove_polya_cutadapt**](#remove_polya_cutadapt)
     - [**map_genome_star**](#map_genome_star)