Commits · 738b4cc7d9784d13f026b79cc3e92b7a7a6adab8 · zavolan_group / pipelines / ZARP

Aug 24, 2021
- Change alfa output folder names · eb1950c9
  BIOPZ-Katsantoni Maria authored 3 years ago and BIOPZ-Bak Maciej committed 3 years ago
  
  eb1950c9
Aug 19, 2021
- feat: add Snakemake profiles · ca55b93c
  BIOPZ-Bak Maciej authored 3 years ago
  
  ca55b93c
Jul 16, 2021
- Bump snakemake version that fixes the reported time in snakemake report. · 37910a09
  BIOPZ-Gypas Foivos authored 3 years ago
  
  37910a09
Jul 13, 2021
- Fix paths to Snakefile for slurm test scripst · 918714cd
  BIOPZ-Gypas Foivos authored 3 years ago
  
  918714cd
Jun 11, 2021
- Add conda support in ZARP · 10885dca
  BIOPZ-Gypas Foivos authored 3 years ago
  
  10885dca
May 07, 2021

Use biocontainers images for star, gffread, salmon, kallisto, cutadapt,... · be8eb02d

Use biocontainers images for star, gffread, salmon, kallisto, cutadapt, samtools, fastqc, alfa, bedtools, bedgraphtobigwig. Change container from bash to ubuntu. Fixes #149

be8eb02d

Feb 26, 2021
- Remove unnecessary files in the results directory · 6804ea67
  Dominik Burri authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  
  6804ea67
Feb 11, 2021
- MultiQC plugins for TIN scores and ALFA Fixes #138 · fab75506
  BIOPZ-Bak Maciej authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  
  fab75506
Jun 23, 2020
- Merge kallisto rules: kallisto_merge_genes and kallisto_merge_transcript · 1f007e19
  BIOPZ-Iborra de Toledo Paula authored 4 years ago and BIOPZ-Gypas Foivos committed 4 years ago
  
  The rules rely on https://github.com/zavolanlab/merge_kallisto Update info in pipeline_documentation.md
  1f007e19
Jun 15, 2020

fix: Renamed samples_concat.tsv to samples.multiple_lanes.tsv. Renamed rows... · 05c167fd

BIOPZ-Katsantoni Maria authored 4 years ago and

Alex Kanitz committed 4 years ago

fix: Renamed samples_concat.tsv to samples.multiple_lanes.tsv. Renamed rows with split with the same name as the other test samples, so that I do not change the tests (md5 and sunch). Removed the one lane samples. Created config that uses this tsv file

05c167fd