- Feb 17, 2020
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- add rule for input preparation (GTF to BED12) - add rule for TIN score calculation - update rule graph and DAG image - update Slurm cluster config
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- Feb 14, 2020
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Alex Kanitz authored
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- Feb 08, 2020
- Feb 07, 2020
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Alex Kanitz authored
- remove log files and add '.snakemake' directories to '.gitignore' - update wrong link in 'README.md' - delete superfluous script documentation 'scripts/labkey_api.md' - add Snakemake-specific file extension '.smk' to subworkflows - remove non-deterministic workflow output from md5 sums
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- Jan 24, 2020
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BIOPZ-Gypas Foivos authored
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- replace corrupt input files - add script that runs locally named `run_test.sh` in the snakemake directory - add script to CI/CD pipeline - fix typo in `paired_end.snakefile` - update samples.tsv with fake adapter `XXXXXXX` when we do not want to trim them
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- Dec 20, 2019
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BIOPZ-Gypas Foivos authored
Rename snakemake/paired_end.snakemake to snakemake/paired_end.snakefile. Fix wiring of rules. Add fake tests.
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BIOPZ-Gypas Foivos authored
Clean up unused code in snakemake/Snakefile. Add 2 threads in htseq_qa (paired end mode). Add example of tsv files from LabKey.
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BIOPZ-Gypas Foivos authored
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BIOPZ-Katsantoni Maria authored
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