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test.test-mir.min.1.pileup.tab 2.29 KiB
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test: include reference file
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>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	test-mir
....>>>>>>>>>>>>>>>>>>>>>>.....................................................	test-mir-5p
.......................................................>>>>>>>>>>>>>>>>>>>>>...	test-mir-3p
Alex Kanitz's avatar
fix: ref does not match pileups in example  
Alex Kanitz committed
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GGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTA	test_ref:3618-3696:+
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test: include reference file
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ACCATGAGGTAGTAGGTTGTATAGTT.....................................................	1
..CATGAGGTAGTAGGTTGTATAGTT.....................................................	10
..GA-GAGGTAGTAGGTTGTATAGTT.....................................................	2
...A-GAGGTAGTAGGTTGTATAGTT.....................................................	19
....TGAGGTAGTAGGTTGTATAGTT.....................................................	17
.....GAGGTAGTAGGTTGTATAGTT.....................................................	33
......AGGTAGTAGGTTGTATAGTT.....................................................	9
......AGGTAGTAGGTTGTATAGTTT....................................................	2
.......GGTAGTAGGTTGTATAGTT.....................................................	7
..................................................GATAACTATACAATCTACTGTCTT.....	1
.....................................................AACTATACAATCTACT..........	1
.......................................................CTATACAATCTACTGTCTTTCT..	28
.......................................................CTATACAATCTACTGTCTTTC-T.	22
.......................................................CTATACAATCTACTGTCTTTCC..	19
.......................................................CTATACAATCTACTGTCTTTC...	12
.......................................................CTATACAATCTACTGTCTTTCTT.	2
.......................................................CTATACAATCTACTGTC.......	1
.......................................................CTATACAATCTACTGTCTT.....	1
.......................................................CTATACAATCTACTGTCTTTCG..	1
........................................................TATACAATCTACTGTCTTTCT..	4
........................................................TATACAATCTACTGTCTTTC-T.	4
........................................................TATACAATCTACTGTCTTTC...	2
........................................................TATACAATCTACTGTCTTTCC..	1
........................................................TATACAATCTACTGTCTTTCCT.	1