feat: add output prefix assignment

This PR closes #2 (closed) .

In order to allow the assignment of the prefix to be made without changing the current behavior, a new CLI argument (--prefix) has been added and set by default to an empty string. During the prefix assignment, if the user has not provided a prefix, the input BAM file name(s) is used instead.

requested review from @kanitz

assigned to @iris.mestrespascual

I am approving already, because I don't think I need to rereview after the minor change I asked for. You can just merge, but make sure to squash merge.

approved this merge request

resolved all threads

added 1 commit

• 63557718 - refactor: use NULL as default

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