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feat: add output prefix assignment

Iris Mestres Pascual requested to merge feat-output-prefix into main

This PR closes #2 (closed) .

In order to allow the assignment of the prefix to be made without changing the current behavior, a new CLI argument (--prefix) has been added and set by default to an empty string. During the prefix assignment, if the user has not provided a prefix, the input BAM file name(s) is used instead.

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