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Commit bea51dbe authored by Kai Schleicher's avatar Kai Schleicher
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Update README.md

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- helper scripts used in the IMCF workflow to register and analyse 3D volumes of mouse brain. - helper scripts used in the IMCF workflow to register and analyse 3D volumes of mouse brain.
- the workflow is documented on the Biozentrums internal wiki space: https://wiki.biozentrum.unibas.ch/x/xEBwEw - the workflow is documented on the Biozentrums internal wiki space: https://wiki.biozentrum.unibas.ch/x/xEBwEw
## median.ijm
- IJ-macro. Applies a 15px median filter to an image and saves the resulting image
## remap_labelimage.py ## remap_labelimage.py
- Fiji macro to workaround a bug in Imaris measurement - Fiji macro to workaround a bug in Imaris measurement
- re-maps the reference atlas label image - re-maps the reference atlas label image
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