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Commit 4d1991e3 authored by Studer Gabriel's avatar Studer Gabriel
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Edit README.md

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......@@ -34,7 +34,7 @@ default output (out.json):
ost compare-structures -m model.pdb -r reference.cif.gz --lddt --local-lddt --qs-score
```
Example output: [compare-structures_example_out.json]
An example output can be found [here](compare-structures_example_out.json)
By default, model-reference chains are aligned using Needleman-Wunsch.
Many benchmarking efforts such as CASP and CAMEO assume residue numbers
......@@ -53,7 +53,7 @@ We can compute LDDT-PLI and BiSyRMSD with:
ost compare-ligand-structures -m model.pdb -r reference.cif.gz -ml *.sdf --rmsd --lddt-pli
```
Example output: [compare-ligand-structures_example_out.json]
An example output can be found [here](compare-ligand-structures_example_out.json)
Again, it is advised to use the `-rna` flag if applicable. In this example,
reference ligands are directly extracted from the provided mmCIF file based on
......
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