solves a variety of problems that gcc (mainly the c++11 as default)
throws at us.

added export for the button group of the overlay manager to allow attaching slots
added support for deleting overlays in the data viewer

Author: Jeff Lovelace

Tjaart de Beer authored 10 years ago and Bienchen committed 10 years ago

Signed-off-by: Stefan Bienert <stefan.bienert@unibas.ch>

Tjaart de Beer authored 10 years ago and Bienchen committed 10 years ago

Signed-off-by: Stefan Bienert <stefan.bienert@unibas.ch>

from the command line using the FileLoader.

Andreas Schenk authored 11 years ago and BIOPZ-Johner Niklaus committed 10 years ago

patch submitted by Mark Livingstone

Andreas Schenk authored 10 years ago and BIOPZ-Johner Niklaus committed 10 years ago

patch by Mark Livingstone

wrong branch, big sorry

This reverts commit e77d08a6.

Andreas Schenk authored 10 years ago and BIOPZ-Johner Niklaus committed 10 years ago

patch by Mark Livingstone

patch by Mark Livingstone

patch submitted by Mark Livingstone

A circular dependency caused the gfx.Objects to be retained
forever. Breaking the circular dependency solves the problem.
As part of the bug-finding process, rewrite large parts of
the Scene Window to make it both simpler and saner

- Fix for data viewer to use main ost menubar: Data viewer menu (labeled Panels) for the active data viewer window will show in the main menu bar.
- Added foxus proxy for the data viewer and its QMdiSubwindow to ensure that the data viewer panel gets the keyboard focus from the beginning.

when adding a gfx entity to the scene using scene.Add(), the time it
takes to add it is growing quadratically with the number of entities in
the scene (only in gui mode), which is caused by resizing of the table
in the sequence viewer.

Substitutes DEBIAN_STYLE_LIBEXEC flag and manages location and name of lib and libexec folders on Debian/Ubuntu-based systems

After an initial superposition, subsets get built using a distance
threshold. These subsets get superposed iteratively until a maximum
number of iterations is reached or the transformation matrix
between two superposition steps converges to the identity matrix.
This procedure usually converges to the largest group of superposable
atoms and is usefull for flexible domains. An example is the
superposition of 1AKE and 4AKE.

the ownership semantics of sip/PyQt changed between versions. Object
which were previously staying in memory are now garbage collected.
Event handlers associated with these objects were then removed.
The fix presented in this patch is rather ugly. We store references to
the objects inside the _Init* functions. Ideally, these types of hacks
would not be required, but I could not find another way to approach
the problem.

the ownership semantics of sip/PyQt changed between versions. Object
which were previously staying in memory are now garbage collected.
Event handlers associated with these objects were then removed.
The fix presented in this patch is rather ugly. We store references to
the objects inside the _Init* functions. Ideally, these types of hacks
would not be required, but I could not find another way to approach
the problem.

Marco Biasini authored 12 years ago and Bienchen committed 12 years ago

The code becomes much simpler, cleaner and fixes as weird crash
with Qt 4.8